Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_0934 |
Symbol | |
ID | 4439853 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | + |
Start bp | 927941 |
End bp | 928702 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 639672789 |
Product | ABC-type uncharacterized transport system, permease component |
Protein accession | YP_814760 |
Protein GI | 116629588 |
COG category | [R] General function prediction only |
COG ID | [COG0390] ABC-type uncharacterized transport system, permease component |
TIGRFAM ID | [TIGR00245] conserved hypothetical protein TIGR00245 |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00000000794066 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 55 |
Fosmid unclonability p-value | 0.313327 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAATG TCATGGTAAG TAATTGGTCG CTTGTCTTTG CTTTTGCATT GGTTTTAGTT TCGATTGCAA TTTCTGCTAA AGAAAAACTT GGTTTAACTA AAGACATTCT AATCAGCGTA GTTCGAGCAA TCGTTCAGTT AATAGTTATC GGCTATGTTT TAAAGTTTAT TTTCCATGTA AATAATTATT GGCTAACCTT TGCATCAACC TTAATTATTA TTTTTAATGC GTCGTGGAAT GCTAATCAAA GAGACCCTAA TCCCGATAAA AAGTTTTATA ATTCTCTGAT TGCGGAAGCT GCTGGTACAT ACGCCACTTT AGCGATCTTA ATTCTTTCAG GCGTGATTAA GCCAATTCCA ATGCAAGTTA TTCCAATTAC AGGAATGATT GCAGGCAACG AAATGGTAGC TATTGGCTTG TGCTATAAAT CTTTAAATGA AAGCTTTCGT GATTTACGGC AGCCGCTATT AGAGAAATTA GCCTTGGGCA GTGATATTAA AACTGCTTCA ATGCCAATTC TAAGAAGAAG CATAAAAACT GCGATGCAGC CAACGATCGA TTCAGCTAAG ACGGTTGGCT TAGTTAACTT ACCAGGGATG ATGTCAGGAT TGATTTTTGC GGGAGTTAAT CCCATTTATG CTATTAAATA TCAAATTATG ATTACATTTA TGCTTTTAGG AGCAACAAGT TTGGGAGCAG TGATTGCTGG ATATTTGGCC TACCGAAATT ACTTTAATGA AAGAATGCAA TTAAAAGGTT GA
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Protein sequence | MKNVMVSNWS LVFAFALVLV SIAISAKEKL GLTKDILISV VRAIVQLIVI GYVLKFIFHV NNYWLTFAST LIIIFNASWN ANQRDPNPDK KFYNSLIAEA AGTYATLAIL ILSGVIKPIP MQVIPITGMI AGNEMVAIGL CYKSLNESFR DLRQPLLEKL ALGSDIKTAS MPILRRSIKT AMQPTIDSAK TVGLVNLPGM MSGLIFAGVN PIYAIKYQIM ITFMLLGATS LGAVIAGYLA YRNYFNERMQ LKG
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