Gene LGAS_0457 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLGAS_0457 
Symbol 
ID4440353 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLactobacillus gasseri ATCC 33323 
KingdomBacteria 
Replicon accessionNC_008530 
Strand
Start bp484270 
End bp485733 
Gene Length1464 bp 
Protein Length487 aa 
Translation table11 
GC content35% 
IMG OID639672315 
Productmajor facilitator superfamily permease 
Protein accessionYP_814293 
Protein GI116629121 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily
[TIGR00880] Multidrug resistance protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.09922e-09 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value0.207287 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCATGC AAAATAAGAG TAATACTAAA ATTGTCACGA TTGCCATCTT TTTGACGACC 
TTTATGACTG CAATTGAAGG TACTATTGTT TCAACGGCCA TGCCAACTAT TGTTTCTGAT
CTGAATGGAT TAGAAATCAT GAATTGGGTA GTTTCCATCT TTTTATTGAT GACTGCTGTT
TCAACACCAA TTTATGGAAA ATTAGCTGAT AGTATCGGCA GGAAACCTGT TTTTCTATTT
GGAATTGCAG TTTTCGTAGT TGGTTCTGCG CTCTGCGGAA TTGCTCAAAA TATGGTAGAA
CTAATCCTCT TTCGTGTGAT TCAGGGATTG GGTTCAGGTG CTGTTCAGCC AGTGGCAGTT
ACAATCATCG CTGATTTATA TACGCTTGAA AAAAGAGCCA AGATGTTAGG ATTGAACTCA
GGCTTTTGGG GAGTAGCTTC TGTTATTGCT CCCTTACTAG GTGGATTTAT TGTACAGCAT
CTTTCATGGC ATTGGATTTT TTATATTAAT GTGCCATTAG GAATCATAGC CTTTCTTTTG
GTCATCTTCT TCTTAAAAGA AAAGAAAACC AGCAGTAATT CTACGTTAGA CTTAAAAGGA
ACAACTTGCT TGGTTATCTT TTTGTTGGCT TTAATGATAT TTTTACAAGA GTTAGAAGAT
GGCTTAAATT TAGTCTTACT AGGCTTAGTC GCTATCATTA TTATTTCAGC TATTATCTTT
TTCAAAACTG AGAAAAGGGC AAAAGATCCA ATTATGCCAT TAGATATGTT GAGTAGTAAA
GAATTTACAA TGATTAACTT GATTACACTA CTTATTTCTG GCGTAGTAAT TGGTTTTGAA
TTTTACATTC CGACCTGGAT GCAAGGGATA AATGCTACAA GTGCGTCTGT TGCTGGCTTT
GCAGTAACAC CAAGTTCTTT AATGTGGATC GTAGGCTCAT TTTTAATTGG TGGTATGTTA
GGTCGATGGG GGATAAAGAA AACATATGAT TATATGTTGC TTATCTTGAT AATTGCCGAT
TTAGCATTAA TTTTAGTTCC AATTTACACA TCGTTTTGGG TATTTTGTCT AATTGCGGCC
TTTAACGGAA CAGCTTTTGG GGCTATTACT ACAGCTTCAC AAGTTCGCTC TCAAGTACTG
GTTGGACGCG ATAAGATTGG TGTTGCGACT AGTTTTAATA CACTAATGAA ATATTTAGGA
CAGACGATGA TGGTATCGAT CTATGGTATT ACTTTTAATA TGGTCGTAGC CAAACATTTA
GCGCATTATC CAAATTTAAC GCAAAAGATG ATGAATGATA TTGTTTCTGC TGATAAGGCT
AAACATTTAG CAGCTAATTT AATACCTGGT TTAAGACAAG TATTATTGAG CGGGTTAAAG
TCTGTATATG TAGTTTCTCT AATTGTTATT GTTTTATCTT TGATTCTTAA TCAACTCTAT
AGGCAAAAGA AAATTGCCAA ATAA
 
Protein sequence
MSMQNKSNTK IVTIAIFLTT FMTAIEGTIV STAMPTIVSD LNGLEIMNWV VSIFLLMTAV 
STPIYGKLAD SIGRKPVFLF GIAVFVVGSA LCGIAQNMVE LILFRVIQGL GSGAVQPVAV
TIIADLYTLE KRAKMLGLNS GFWGVASVIA PLLGGFIVQH LSWHWIFYIN VPLGIIAFLL
VIFFLKEKKT SSNSTLDLKG TTCLVIFLLA LMIFLQELED GLNLVLLGLV AIIIISAIIF
FKTEKRAKDP IMPLDMLSSK EFTMINLITL LISGVVIGFE FYIPTWMQGI NATSASVAGF
AVTPSSLMWI VGSFLIGGML GRWGIKKTYD YMLLILIIAD LALILVPIYT SFWVFCLIAA
FNGTAFGAIT TASQVRSQVL VGRDKIGVAT SFNTLMKYLG QTMMVSIYGI TFNMVVAKHL
AHYPNLTQKM MNDIVSADKA KHLAANLIPG LRQVLLSGLK SVYVVSLIVI VLSLILNQLY
RQKKIAK