Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_0360 |
Symbol | |
ID | 4440291 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | + |
Start bp | 382581 |
End bp | 383372 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 639672218 |
Product | amino acid ABC transporter periplasmic protein |
Protein accession | YP_814203 |
Protein GI | 116629031 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00000000870142 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.00010092 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATGAAAA AAATAATAAA ACTTCTCGGC CTACTGATTA TTGTAATTAC TTCTGTTGGA TTGGCAGGCT GCCAAAGACA AGCAAGCTCT TGGCAGAAAA TTAAAGAGCG TGGAACTCTA GTAATTGGTG TGGATGATAG TTTTGTACCA ATGGATTTTC GTCAAAAAAA TGGTAAGCTA GTGGGCTTTG ATGTTGACTT AGCAACAGCC GTCTGCAAGG AAATTGGTTT AAAACCTGAT TTTCAAACTA TCGACTGGTC GATGAAAGAA ACCGAATTAC GTAATGGAAC AATTGATGTC ATTTGGAATG GGTATACTAA AACTAAAGCT CGAGCAAAAA AAGTAGCTTT TTCACGACCT TACCTTGAAA ACGATCAAAT TTTAGTAACG CGTAAAAAAG AACAGATCAA TAATTATTGC CAAATGAAAG GTAGGATTCT CGGAGTACAA ACAGGATCGT CTGGTGCCGA TGACTTGGAT AATTATCCTA ATGTTCTAAA AAAGCGGGTT AAAAGCACGG TTTTATATGA TACTTATAAC AATGCCTTCA TCGATTTAAA AGCTGGCAGA ATCGACGGTT TATTGATCGA TGGGGTATAT GCAAACTATT ACTTAGCTCA TAGCAAGTAC CAAAAAGAAT TTAAAAAAGA AAAACTACCA TATCCAAGCG AAAAATTTTC AGTAGGAATC AATAAGAAAG ATCAAATTTT GAAAGATAAG ATTAATCAAG CGCTTGATCA TTTAGAAAAG ACTGGCGAGT TAGAAAAGAT AAAACAAAAA TGGTTTAATT AA
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Protein sequence | MMKKIIKLLG LLIIVITSVG LAGCQRQASS WQKIKERGTL VIGVDDSFVP MDFRQKNGKL VGFDVDLATA VCKEIGLKPD FQTIDWSMKE TELRNGTIDV IWNGYTKTKA RAKKVAFSRP YLENDQILVT RKKEQINNYC QMKGRILGVQ TGSSGADDLD NYPNVLKKRV KSTVLYDTYN NAFIDLKAGR IDGLLIDGVY ANYYLAHSKY QKEFKKEKLP YPSEKFSVGI NKKDQILKDK INQALDHLEK TGELEKIKQK WFN
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