Gene LGAS_0343 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLGAS_0343 
Symbol 
ID4440596 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLactobacillus gasseri ATCC 33323 
KingdomBacteria 
Replicon accessionNC_008530 
Strand+ 
Start bp367171 
End bp368874 
Gene Length1704 bp 
Protein Length567 aa 
Translation table11 
GC content33% 
IMG OID639672202 
Productcellobiose-specific PTS system IIC component 
Protein accessionYP_814187 
Protein GI116629015 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1440] Phosphotransferase system cellobiose-specific component IIB
[COG1455] Phosphotransferase system cellobiose-specific component IIC 
TIGRFAM ID[TIGR00394] phosphotransferase system, lactose specific, IIC component
[TIGR00410] PTS system, lactose/cellobiose family IIC component
[TIGR00853] PTS system, lactose/cellobiose family IIB component 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.00000105406 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.00000748526 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATGGGT TGGTAAAAAG AATTGAAAAA GCGCAGCCAT TCTTTAGAAA AGTTGCGACT 
AATCAATATT TAAGAGCAAT TCGTGATGGC TTCATCGCGT TAATGCCAAT TATTATCTTT 
TCAAGTTTTT TCTTGTTAAT TGCTAATGTG CCCCAAATTT GGGGATTTGT TTGGCCTAAA 
AAAGTAGCTA CAGCTTTAAA TTTATTTTAT AACTTATCAA TGGGCTTTTT GTCCTTAATG 
GCGGCTTCTA CTGTAGCCAA GGCCTTAACT GGAAGTTTAA ATCTAAAGTT GCCAAAAACT 
AATCAAATTC CAGTTGCTGG AGTTCAATAT ACGGCTCAAA TTTCTTTTGC ATTTGTGGCA 
ATAGATACTT TATTAAATAA AGGAAATTTA TATTTAGCTA CTGATATGAT TGGGACTAAA 
GGATTAATTT GTGCCTTCTT AGTAGCATTT ATTGTACCTA ATATTTATTA TTTTTGTTTT 
AAACATAATG TCACAATCAC GCTACCTGAT GTAGTACCTC AAAATATTGC GCAAGCCTTT 
AAAAATATTG TTCCCTTTGC TATAGCAACT ACTTTCTTTT GGGCATTTAC GTTAATTTTT 
AGAGCTTTAA CTAATATGAA TTTGGCAGCT TGGATAATTA AAAGTCTAAC TCCACTTTTT 
ACTGCAGCGG ATGGGTATGT TGGATTAGCA ATTATTTATG GTGCAATGGC GTTCTTCTGG 
TTTATCGGAA TTCAAGGGCC CTCAATCGTT GAACCAGCAG TTACGGCAAT CTACTTAACT 
AATGTTGAAG CTAATTTAAG AGCATTTAAT TCAGGAAATA TTCAAGGCGC TAATCACATT 
TTGTCACAAG GAATTCAAAT GTTTGTTGCT ACTTTAGGAG GAACTGGAGC AACTTTAGTA 
GTAACGTTTA TGTTTGCCTT TTTGTCTAAA TCTAAACAAT TAAAAGCAGT TGGACGTGCA 
TCAACAATTC CAGTTATTTT TGGTGTTAAT GAACCTATTT TATTTGGTGC TCCACTGATC 
TTGAATCCAA TTTTCTTTAT CCCTTTTATT TTTGCGCCAA TTCTTAATGT TTGGATCTTT 
AAAATTTTTG TTGATGTGCT TCATATGCCG TCATTTATTT ACAACTTACC ATGGACCACG 
CCACCAACAT TAGGATTGTG GATGGGAACT GGTTTTAATA TTTTAGCTTT ACTATTAGGA 
ATTTTATTAC TAGTAGTTGA TTCATTATTG TATTATCCAT TTTTTAAGGC TTATGATGCT 
TCAATGCTAG CCCAAGAAGA GAAAAAGGAA GAACTTGAAG AAAAAGATAA TAAGAAATCT 
GTTGTATCAT CTGCTGAGCC TAAATTTAAT GAATCTGAGA TTCCACTAGG CAAAACTAAA 
GATCAACAAG CACTAAATGT TTTAGTTTTA TGTGCTGGTG GTGGGACATC TGGAATTTTA 
GCTAAGTCAC TTAATAAATT AGCTAAAGAA GACAAGTTAC CTTTAAATGC AGCAGCTGCC 
GCATTTGGAT CACATCATGA TTTAATATCT GGAATGGATG TAGTAATTTT AGCGCCGCAA 
ATGGATACCA TGAAAGATGA ACTTGCAAAG GAATGTAAGC AAAATAATGC TCGTATGATT 
ACCACTACTG GAAAACAATA TATTTACATG ACGCAACATG CTAATGAATG TTTGAAGCTA 
TTAATCAATG ATATTAATAA ATGA
 
Protein sequence
MDGLVKRIEK AQPFFRKVAT NQYLRAIRDG FIALMPIIIF SSFFLLIANV PQIWGFVWPK 
KVATALNLFY NLSMGFLSLM AASTVAKALT GSLNLKLPKT NQIPVAGVQY TAQISFAFVA 
IDTLLNKGNL YLATDMIGTK GLICAFLVAF IVPNIYYFCF KHNVTITLPD VVPQNIAQAF 
KNIVPFAIAT TFFWAFTLIF RALTNMNLAA WIIKSLTPLF TAADGYVGLA IIYGAMAFFW 
FIGIQGPSIV EPAVTAIYLT NVEANLRAFN SGNIQGANHI LSQGIQMFVA TLGGTGATLV 
VTFMFAFLSK SKQLKAVGRA STIPVIFGVN EPILFGAPLI LNPIFFIPFI FAPILNVWIF 
KIFVDVLHMP SFIYNLPWTT PPTLGLWMGT GFNILALLLG ILLLVVDSLL YYPFFKAYDA 
SMLAQEEKKE ELEEKDNKKS VVSSAEPKFN ESEIPLGKTK DQQALNVLVL CAGGGTSGIL 
AKSLNKLAKE DKLPLNAAAA AFGSHHDLIS GMDVVILAPQ MDTMKDELAK ECKQNNARMI 
TTTGKQYIYM TQHANECLKL LINDINK