Gene LGAS_0316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLGAS_0316 
Symbol 
ID4440569 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLactobacillus gasseri ATCC 33323 
KingdomBacteria 
Replicon accessionNC_008530 
Strand
Start bp345285 
End bp346223 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content38% 
IMG OID639672175 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_814160 
Protein GI116628988 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones73 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value6.24997e-25 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATTGAAT TTGAAAAACC AAATATTACC GTAGTAGACC AAGAGGAGGC ATACGGTAAG 
TTTGTTGTCG AACCACTGGA ACGCGGTTTC GGGACTACTT TAGGTAACTC ACTCCGTCGA
GTTTTACTTA CTTCTATTCC AGGTACGGCA CTTTCTTACA TTCAGATTGA TGGTGTGTTA
CATGAATTTT CAACAGTTCC TGGCGTTAGA GAAGACGTCA CAAAAATTAT TCTTAATTTG
AAGAAACTAG AGTTAAAGTC ACTCTCAGAT GAAGAAAAAA TTGCTGAAAT CGATGTAACT
GGTCCAGCAA TCGTAACTGC TGCTGATTTA AAGGTCGACT CTGATATTGA GGTCTTAAAT
CCAGATCAAT ATATTTGTAG TATTGCTGAT GGTGGCCATT TGCATATGAA CGTTGCGATC
AAGAATGGTC GTGGTTATGT TCCCGCAAGT GAAAACAAGA CAGATGACAT GCCTATTGGC
GTCATCCCCG TTGATTCACT CTTTTCACCA ATCAAAAAAG TTAACTACCA AGTTGAAAGT
GCTCGTGTTG GTAAAAGAGA CGATTATGAC AAATTAACTT TAGAAATTTG GACTGATGGT
TCAATCACAC CTAATGATGC CCTTAGTTTC GCTGCGAAGA TTCTTGTAGA ACACTTCAAA
GTATTTATGT CTACTGATAT GGATGCGCAG TTTGATGATG TAATGGTAGA AAAAGAGGAC
GATAAGAATG AGAAGAAGCT TGAGATGACG ATCGAAGAGC TTGACTTATC TGTTCGTTCA
TATAACTGCT TGAAACGTGC AGGAATTAAT ACTGTTCAAG AATTAACTGA TAAATCTGAA
GCAGATATGA TGCGCGTACG TAACTTAGGA CGTAAGTCAT TAGAAGAAGT AAAGAATAAA
CTTGCCGAAC TTGGTCTATC ACTTCGTCAA GATGACTAA
 
Protein sequence
MIEFEKPNIT VVDQEEAYGK FVVEPLERGF GTTLGNSLRR VLLTSIPGTA LSYIQIDGVL 
HEFSTVPGVR EDVTKIILNL KKLELKSLSD EEKIAEIDVT GPAIVTAADL KVDSDIEVLN
PDQYICSIAD GGHLHMNVAI KNGRGYVPAS ENKTDDMPIG VIPVDSLFSP IKKVNYQVES
ARVGKRDDYD KLTLEIWTDG SITPNDALSF AAKILVEHFK VFMSTDMDAQ FDDVMVEKED
DKNEKKLEMT IEELDLSVRS YNCLKRAGIN TVQELTDKSE ADMMRVRNLG RKSLEEVKNK
LAELGLSLRQ DD