Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_0316 |
Symbol | |
ID | 4440569 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | + |
Start bp | 345285 |
End bp | 346223 |
Gene Length | 939 bp |
Protein Length | 312 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 639672175 |
Product | DNA-directed RNA polymerase subunit alpha |
Protein accession | YP_814160 |
Protein GI | 116628988 |
COG category | [K] Transcription |
COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
Num covering plasmid clones | 73 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 6.24997e-25 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTGAAT TTGAAAAACC AAATATTACC GTAGTAGACC AAGAGGAGGC ATACGGTAAG TTTGTTGTCG AACCACTGGA ACGCGGTTTC GGGACTACTT TAGGTAACTC ACTCCGTCGA GTTTTACTTA CTTCTATTCC AGGTACGGCA CTTTCTTACA TTCAGATTGA TGGTGTGTTA CATGAATTTT CAACAGTTCC TGGCGTTAGA GAAGACGTCA CAAAAATTAT TCTTAATTTG AAGAAACTAG AGTTAAAGTC ACTCTCAGAT GAAGAAAAAA TTGCTGAAAT CGATGTAACT GGTCCAGCAA TCGTAACTGC TGCTGATTTA AAGGTCGACT CTGATATTGA GGTCTTAAAT CCAGATCAAT ATATTTGTAG TATTGCTGAT GGTGGCCATT TGCATATGAA CGTTGCGATC AAGAATGGTC GTGGTTATGT TCCCGCAAGT GAAAACAAGA CAGATGACAT GCCTATTGGC GTCATCCCCG TTGATTCACT CTTTTCACCA ATCAAAAAAG TTAACTACCA AGTTGAAAGT GCTCGTGTTG GTAAAAGAGA CGATTATGAC AAATTAACTT TAGAAATTTG GACTGATGGT TCAATCACAC CTAATGATGC CCTTAGTTTC GCTGCGAAGA TTCTTGTAGA ACACTTCAAA GTATTTATGT CTACTGATAT GGATGCGCAG TTTGATGATG TAATGGTAGA AAAAGAGGAC GATAAGAATG AGAAGAAGCT TGAGATGACG ATCGAAGAGC TTGACTTATC TGTTCGTTCA TATAACTGCT TGAAACGTGC AGGAATTAAT ACTGTTCAAG AATTAACTGA TAAATCTGAA GCAGATATGA TGCGCGTACG TAACTTAGGA CGTAAGTCAT TAGAAGAAGT AAAGAATAAA CTTGCCGAAC TTGGTCTATC ACTTCGTCAA GATGACTAA
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Protein sequence | MIEFEKPNIT VVDQEEAYGK FVVEPLERGF GTTLGNSLRR VLLTSIPGTA LSYIQIDGVL HEFSTVPGVR EDVTKIILNL KKLELKSLSD EEKIAEIDVT GPAIVTAADL KVDSDIEVLN PDQYICSIAD GGHLHMNVAI KNGRGYVPAS ENKTDDMPIG VIPVDSLFSP IKKVNYQVES ARVGKRDDYD KLTLEIWTDG SITPNDALSF AAKILVEHFK VFMSTDMDAQ FDDVMVEKED DKNEKKLEMT IEELDLSVRS YNCLKRAGIN TVQELTDKSE ADMMRVRNLG RKSLEEVKNK LAELGLSLRQ DD
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