Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_0297 |
Symbol | rpsC |
ID | 4438807 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | + |
Start bp | 336486 |
End bp | 337154 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 639672156 |
Product | 30S ribosomal protein S3 |
Protein accession | YP_814141 |
Protein GI | 116628969 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0092] Ribosomal protein S3 |
TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 66 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 1.5955900000000001e-28 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGGGTCAAA AGATTAACCC AAATGGTTTC CGTCTCGGTG TTAACCGTGA TTGGGAAGCA AAGTGGTATG CAGACAAAAA CTACGCTGAC ACTTTAAATG AAGATTTACG TATTAGAAAG TTCATCTCTG AAAAGTTAGC TGATGCATCT GTTTCCACTG TGGAAATTGA ACGTGCTGCA AACAGAATTA ACATTTCTAT CCACACTGCA AAACCTGGTA TGGTTATCGG TAAAGGTGGT AAAGAAGTTG AAGCTTTAAG AAAACAACTT AGTGCTTTAA CTAAGAAGAA CGTTCACATT AATATTGTTG AAATTAAGAA GCCTGATTTA GATGCTAAAT TAGTAGGCGA AGGTATTGCT CGTCAACTTG AAGCAAGAAT TGCATTTAGA CGTGCAACTC GTCAAGCAAC TCAAAGATCT ATGCGTTCTG GTGCTAAGGG TATCAAGGTT CAAACTGCTG GTCGTTTGAA CGGTGCTGAT ATGGCAAGAA GAGAATGGCA TACTGAAGGT AGTGTTCCAC TTCATACTTT AAGAGCAGAT ATTGATTATG CTTGGGTAGA AGCTGCAACT ACTTATGGTC AAATTGGTGT TAAGGTTTGG ATCAATCGTG GTGAAATTTT ACCACAACGT AAGAACAAAC CTTCTAAGAA AACGAAGGGA GGAAACTAA
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Protein sequence | MGQKINPNGF RLGVNRDWEA KWYADKNYAD TLNEDLRIRK FISEKLADAS VSTVEIERAA NRINISIHTA KPGMVIGKGG KEVEALRKQL SALTKKNVHI NIVEIKKPDL DAKLVGEGIA RQLEARIAFR RATRQATQRS MRSGAKGIKV QTAGRLNGAD MARREWHTEG SVPLHTLRAD IDYAWVEAAT TYGQIGVKVW INRGEILPQR KNKPSKKTKG GN
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