Gene LGAS_0279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLGAS_0279 
Symbol 
ID4438719 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLactobacillus gasseri ATCC 33323 
KingdomBacteria 
Replicon accessionNC_008530 
Strand
Start bp315816 
End bp316823 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content40% 
IMG OID639672138 
ProducttRNA-dihydrouridine synthase 
Protein accessionYP_814125 
Protein GI116628953 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID[TIGR00737] putative TIM-barrel protein, nifR3 family 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.690235 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value0.007193 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGAAAAACG ATAGTTGGAA AATTAGGGAT GTTGAAATTC CTAATCGTGT AGTAGTTGCA 
CCGATGGCTG GAATTTCAAA TGCTGCTTTC CGAGTAGTAT GTAAAGAATT TGGCGCAGGC
CTAGTGGTTT GTGAAATGAT TTCGGATCAT GGAATTATTT ACCGCAATAA AAAGACTTTA
GAGATGTTAA CAGTTGATCC TAGGGAACAT CCGATGAGTA TTCAAATTTT CGGCGGAAGT
GAAGAAACTT TAGTTGAAGC TGCTCATTAT GTGGATACTC ATACTGCCGC TGATATCATC
AACATCAATA TGGGATGTCC TGTGCCAAAA GTAACTAAGA CTGATGCTGG AGCTCGCTGG
TTGTTAGACC CAAATAAGAT TTATCAGATG GTTCATGCTG TAGTCCGGAA TGTAAGCAAG
CCTGTAACGG TTAAAATGAG AACTGGCTGG GATCAAAAGC ATATATTTGC AGTTGAAAAT
GCACTAGCTG CTCAAGAAGC TGGTGCAAGT GCTGTAGCTA TGCACGGACG TACAAGAAAG
CAAATGTACA TGGGAGAAGC CGACTGGGAA ACCCTGAAGG AAGTTGCAGA TGCATTAACC
ATACCTTTTG TTGGTAATGG GGATGTTACA ACACCTGAAA AAGCAAAAGC AATGCTTGAA
GATGTTGGAG CTGACGCAGT AATGGTAGGT AGAGCAGCCT TAGGCAATCC ATGGATTATT
AAAGACATGG TTCACTATTT AGACACTGGT GAAAAACTAC GCCCACAAAC AGTTGAAGAA
AAGGTAGCAA CTGCTAAAGA ACAGTTAAAT GGTTTAATTG ATCTTAAAGG TGAAAAAATT
GCTGTACCGG AATTTAGACG TCAAGCTGCT TATTATTTAA AAGGAATTCC CCGTTCAGCT
CGAACCCGTG CTAAAATAAA TGATGTTTGG ACGAAACAAG AAGTTTTTGA CTTGTTGGAT
GACTTTGTGG AAAAATATGA AGCAAGACAA AAGCAATTTA ATCGATAG
 
Protein sequence
MKNDSWKIRD VEIPNRVVVA PMAGISNAAF RVVCKEFGAG LVVCEMISDH GIIYRNKKTL 
EMLTVDPREH PMSIQIFGGS EETLVEAAHY VDTHTAADII NINMGCPVPK VTKTDAGARW
LLDPNKIYQM VHAVVRNVSK PVTVKMRTGW DQKHIFAVEN ALAAQEAGAS AVAMHGRTRK
QMYMGEADWE TLKEVADALT IPFVGNGDVT TPEKAKAMLE DVGADAVMVG RAALGNPWII
KDMVHYLDTG EKLRPQTVEE KVATAKEQLN GLIDLKGEKI AVPEFRRQAA YYLKGIPRSA
RTRAKINDVW TKQEVFDLLD DFVEKYEARQ KQFNR