Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_0279 |
Symbol | |
ID | 4438719 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | + |
Start bp | 315816 |
End bp | 316823 |
Gene Length | 1008 bp |
Protein Length | 335 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 639672138 |
Product | tRNA-dihydrouridine synthase |
Protein accession | YP_814125 |
Protein GI | 116628953 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.690235 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 0.007193 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAAAAACG ATAGTTGGAA AATTAGGGAT GTTGAAATTC CTAATCGTGT AGTAGTTGCA CCGATGGCTG GAATTTCAAA TGCTGCTTTC CGAGTAGTAT GTAAAGAATT TGGCGCAGGC CTAGTGGTTT GTGAAATGAT TTCGGATCAT GGAATTATTT ACCGCAATAA AAAGACTTTA GAGATGTTAA CAGTTGATCC TAGGGAACAT CCGATGAGTA TTCAAATTTT CGGCGGAAGT GAAGAAACTT TAGTTGAAGC TGCTCATTAT GTGGATACTC ATACTGCCGC TGATATCATC AACATCAATA TGGGATGTCC TGTGCCAAAA GTAACTAAGA CTGATGCTGG AGCTCGCTGG TTGTTAGACC CAAATAAGAT TTATCAGATG GTTCATGCTG TAGTCCGGAA TGTAAGCAAG CCTGTAACGG TTAAAATGAG AACTGGCTGG GATCAAAAGC ATATATTTGC AGTTGAAAAT GCACTAGCTG CTCAAGAAGC TGGTGCAAGT GCTGTAGCTA TGCACGGACG TACAAGAAAG CAAATGTACA TGGGAGAAGC CGACTGGGAA ACCCTGAAGG AAGTTGCAGA TGCATTAACC ATACCTTTTG TTGGTAATGG GGATGTTACA ACACCTGAAA AAGCAAAAGC AATGCTTGAA GATGTTGGAG CTGACGCAGT AATGGTAGGT AGAGCAGCCT TAGGCAATCC ATGGATTATT AAAGACATGG TTCACTATTT AGACACTGGT GAAAAACTAC GCCCACAAAC AGTTGAAGAA AAGGTAGCAA CTGCTAAAGA ACAGTTAAAT GGTTTAATTG ATCTTAAAGG TGAAAAAATT GCTGTACCGG AATTTAGACG TCAAGCTGCT TATTATTTAA AAGGAATTCC CCGTTCAGCT CGAACCCGTG CTAAAATAAA TGATGTTTGG ACGAAACAAG AAGTTTTTGA CTTGTTGGAT GACTTTGTGG AAAAATATGA AGCAAGACAA AAGCAATTTA ATCGATAG
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Protein sequence | MKNDSWKIRD VEIPNRVVVA PMAGISNAAF RVVCKEFGAG LVVCEMISDH GIIYRNKKTL EMLTVDPREH PMSIQIFGGS EETLVEAAHY VDTHTAADII NINMGCPVPK VTKTDAGARW LLDPNKIYQM VHAVVRNVSK PVTVKMRTGW DQKHIFAVEN ALAAQEAGAS AVAMHGRTRK QMYMGEADWE TLKEVADALT IPFVGNGDVT TPEKAKAMLE DVGADAVMVG RAALGNPWII KDMVHYLDTG EKLRPQTVEE KVATAKEQLN GLIDLKGEKI AVPEFRRQAA YYLKGIPRSA RTRAKINDVW TKQEVFDLLD DFVEKYEARQ KQFNR
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