Gene LGAS_0259 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLGAS_0259 
Symbol 
ID4438802 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLactobacillus gasseri ATCC 33323 
KingdomBacteria 
Replicon accessionNC_008530 
Strand
Start bp292867 
End bp293793 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content34% 
IMG OID639672118 
Productribose/xylose/arabinose/galactoside ABC-type transporter permease 
Protein accessionYP_814105 
Protein GI116628933 
COG category[R] General function prediction only 
COG ID[COG4120] ABC-type uncharacterized transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0510641 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones68 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCAAAGA AATGGGGTTG TGTACAGATG AATTTGATCG TATCTGCAAT TGGTCAAGGA 
TTATTATGGG CATTATTAGG CTTAGGATTA TATTTAACTT TTAGAATTTT AAATTTTGCT
GATATGACAG TCGAAGGAAC TTTCCCATTA GGAGCAGCTG TGGCTGTTGC TAATCTTGCT
CATGGAATGT CACCATATTT GGCTACTTTT TTAGCTTTGC TTGCGGGGAT GCTTGCAGGG
TTAGTGACCG GTTTATTATA TACAAAGGGA AAAATTCCGA TTTTGCTTGC TGGTATTTTG
ACGATGACTG CGATTTATTC AATTAACTTG AGAATTATGG GCGGTTCTAA TATTTCATTA
ATTGGTAAGA AAACTCTGCT TAATAATGAA TTTTTGAGAT CTCTACCTCA GTATTTTAAT
AGCGTGGTCT TAGGAATAAT AGTTGTAGTA ATTATTACAG GAATTTTGGT TTTCTTTTTA
AATACAGATT TTGGTCAAGC TTTTATTGCT ACGGGAGATA ATCCTAAAAT GGCTAAGTCT
TTAGGAATCT ATACTGATTC AATGATAATT ATCGGTTTAA TGCTTTCAAA CGGAATTGTT
GCCTTGTGCG GAGCATTAAT TGCGCAAAAT AATGGCTATG CTGATATCAA TATGGGCATT
GGAACGATTG TTATTGCTTT AGCTTCAATT ATTATTGGTG AAGTAGCTTT TGGAGAATTA
ACGTTAAATC AAAGATTAGT AGCAGTGACT TTAGGGAGTA TTATTTATCG CTTAATTTTA
TTAGCAGTCT TACAACTAGG CTTTTCAGCT AATGATTTAA ATTTAATTTC TTCAATTGTT
TTGGCACTTT GCATGATGCT GCCACAATTA GAAAAAATTG TTCACTTGAA GAAGCCGATA
GAGAAAGGAG TGAAGAAGCA TGACTAA
 
Protein sequence
MSKKWGCVQM NLIVSAIGQG LLWALLGLGL YLTFRILNFA DMTVEGTFPL GAAVAVANLA 
HGMSPYLATF LALLAGMLAG LVTGLLYTKG KIPILLAGIL TMTAIYSINL RIMGGSNISL
IGKKTLLNNE FLRSLPQYFN SVVLGIIVVV IITGILVFFL NTDFGQAFIA TGDNPKMAKS
LGIYTDSMII IGLMLSNGIV ALCGALIAQN NGYADINMGI GTIVIALASI IIGEVAFGEL
TLNQRLVAVT LGSIIYRLIL LAVLQLGFSA NDLNLISSIV LALCMMLPQL EKIVHLKKPI
EKGVKKHD