| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0110 |
|---|
| Symbol | |
|---|
| ID | 4440482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 123528 |
|---|
| End bp | 124610 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 639671971 |
|---|
| Product | multitransmembrane protein |
|---|
| Protein accession | YP_813960 |
|---|
| Protein GI | 116628788 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5438] Predicted multitransmembrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.000000000000156468 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAAAAAGA ATCAAAAAGT TTGGCTTAGT TTAACGACTT TAATTGTTGG CATAGTTTTT
ACGGCAATTA CGTATTTTTC TACAACTTTT GCTAGCAAGC CAATTGCTGT AATTACCGAT
AATCACATTC AAGACACGCT AATTAATAAA ACCAAAGACA ATTATGAAAA TAAAGATGAA
GTTAGGCAAC AAATATTGCA TTTAAAAATC ATCTCAGGAA AATACCGAGG TAAGAGATTC
GTTGTTACCA ATACCTACTC TCCTTCACAG GCTGTTTCAC AAAAATATCG TCCTCATCAA
CGTGTGATTG TATCTTTTAT TAAAGAAAAG CCAAAATTAG TTGAACCTAA ACGTGATTGG
GTAGTTGTCT TGAGCATGTT TTTGACTATT AGTCTGATCA TTTTAATCAC AGGAAAACAA
GCCAGTTTAT TATTAATTTC AATGGTTTTG AATAGCATTA TTTTTTATTT TGTAATTAAA
AATGATATTA AAGAAAATGG AACTAAAATT TTCTTAGTTT ATGGTATTGC GGCCATTTTG
TTTACCCTTA TTTCCCTGAT AATTGTACAA GGCTTTAATC AGAAAATGAT TGTTACATTA
TGCGCTACGC TTTTAGGAGT TTTTGTGTCG TTTGGAATTT TTTATTTAGT TATGAGGTTG
ACACATGAAC ACGGGATTGA CTATGAAGCA GTTGATTATG CAACGCAAGA TCCGCGTGCG
CTATTTTTAT CTCAGACCAT TTTAGGAGTT CTTGGAGCTG TAATGGATGA AGCGACTGAT
ATCGTTTCAA GTCTTTATGC ATTAGCTAAG CATAAGGTTG ACTTAACTTT TAAGGAGTTA
TTTCTTAGTG GCCGGACCTT AGGACAAGAA ATTATGGGGC CATTAATAAA TGTATTAGTA
CTGATTTTTA TGGCCGAAGC GCTCCCTATG ACAATTTTGT ATCTAAGAGA TAATAATACT
TTAGTTTATA CTTTTAAATA TACTCTTTCT TTAGGTGTAA TTCAGAGCTT AAGTTCAGCG
ATAGGCATAG TTTTAACTGT GATTTTTGCC ACTCTTGCTA GTTCTGTCTT TTTAAAAAAA
TAA
|
|---|
| Protein sequence | MKKNQKVWLS LTTLIVGIVF TAITYFSTTF ASKPIAVITD NHIQDTLINK TKDNYENKDE
VRQQILHLKI ISGKYRGKRF VVTNTYSPSQ AVSQKYRPHQ RVIVSFIKEK PKLVEPKRDW
VVVLSMFLTI SLIILITGKQ ASLLLISMVL NSIIFYFVIK NDIKENGTKI FLVYGIAAIL
FTLISLIIVQ GFNQKMIVTL CATLLGVFVS FGIFYLVMRL THEHGIDYEA VDYATQDPRA
LFLSQTILGV LGAVMDEATD IVSSLYALAK HKVDLTFKEL FLSGRTLGQE IMGPLINVLV
LIFMAEALPM TILYLRDNNT LVYTFKYTLS LGVIQSLSSA IGIVLTVIFA TLASSVFLKK
|
|---|
| |