| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0096 |
|---|
| Symbol | |
|---|
| ID | 4440503 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 108377 |
|---|
| End bp | 109132 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 639671957 |
|---|
| Product | RNase H |
|---|
| Protein accession | YP_813946 |
|---|
| Protein GI | 116628774 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0328] Ribonuclease HI |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 64 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.000638062 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAATACT ATGCAGTAAA AAAAGGTCGT ACACCTGGTG TTTACCGGAC ATGGGAAGAT
GCTAAAAAAC AAGTTGATGG CTTCTCCGGT GCCGAATATA AGTCTTTTGA AAAGATAACT
GATGCGACTG AGTATTTAGA CTGGAATAAG GAAACGCAAC CAGATATTGT TAAAGAAGAT
TCCTTAAGCA ATGCGATTAA GAAAATCCAA GCTGCTAAGA TCGTGCCCCA GGCTAAAAAG
AAAAAAATAA AAAAGACTAG TTCTAATAAT CCAGCTGACT ATTTTGCAAC TATTTATACA
GATGGTGGAT CACGAAATAC TGGTGTGCAT AAAGGGGGAC ATGTTAATAA AACTGATAAA
GCAGCGTGGG CTTATTTAAT TGAATGGCAA GGTGGTCGCA CTTATGGTTC GGGCGGAGAA
TTTGGCGCCA CAAACAATAA GATGGAATTA TTGGGGCTAA TTAATGCTTT AGAGAAATTA
CTTGAGTTGA AGTTTAATGA TAAACATCTT TTATTTGTTT TAGATTCACA ATATGTTTTA
AATGGAATTA ATAAGCACTG GATTGAGGGA TGGAAGAAAC GTGGCTGGAA ACGAGCAAAT
GGTCCTTTAA TCAATGCTTC CGAATGGAAA AAACTAGATA GTTTACTAGG TCATTTTTCG
GATAGTACTT TTAGCTGGAC CAAGGGACAT GCTGATAACG AGGGCAATGT TTTTGTGGAC
CATGAACTAA ATCGTTATAT GGATAAAATG AAGTAG
|
|---|
| Protein sequence | MKYYAVKKGR TPGVYRTWED AKKQVDGFSG AEYKSFEKIT DATEYLDWNK ETQPDIVKED
SLSNAIKKIQ AAKIVPQAKK KKIKKTSSNN PADYFATIYT DGGSRNTGVH KGGHVNKTDK
AAWAYLIEWQ GGRTYGSGGE FGATNNKMEL LGLINALEKL LELKFNDKHL LFVLDSQYVL
NGINKHWIEG WKKRGWKRAN GPLINASEWK KLDSLLGHFS DSTFSWTKGH ADNEGNVFVD
HELNRYMDKM K
|
|---|
| |