| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0011 |
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| Symbol | |
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| ID | 4438896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus gasseri ATCC 33323 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008530 |
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| Strand | + |
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| Start bp | 11245 |
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| End bp | 13263 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 639671873 |
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| Product | signal protein |
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| Protein accession | YP_813866 |
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| Protein GI | 116628694 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3887] Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00560638 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0000000733083 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGGCT TTTTACGCAA ATTAGAATTG CCTGAATTTG TTAAAGATAC GCGTTTAACA
GCATCATTGA TTATTGTCCT AGTCTTATCC TTATTGGGAG CTATTATTGG GATGCTAATT
AGTCCGTTAT TTGGACTAGC AATGGTGCTA CTGTTTATCT TGACGGTTAT TTTTGCAGTA
TATGGCATTT ATGTTCTAGC TGGTAATACA AACAACTATG CTGCTAATCT TTCATATCGT
ATCAAGCGCG GTGAACAAGA GGCAATGATC AAAATGCCAC TTGGAATTAT GCTTTACGAT
AAGGACCGAC AGATTCAATG GATTAATCCA TATCTACAGA TGTATCTGCA TGATAAAGAT
ATTATTGGCT CTTCGATCTC TTCAGTTGAT AAAGAATTAG CCAAATACAT TGATGATGCT
ATTAAGTCTA ATAGTAAGCA AAATAAAATT ATCAAATGGG GCGACCGAAA GTTTGAGATG
GTCGTCCAGG ATGATTTAGG TGTGGTTTAT TTACTTGATA TTACGCGTTA CGCAAATATT
GAAGAAAAGT ATAAACAAGA AAGATTGGCA ATTGGCTTAA TATTTATTGA TAACTATGAT
GAATTAAGCC AAGCAATGGG CGATCAAAAC TTAACAAATA TGAGTTCATA CGTTCAAACT
ACCCTGAGCA AGTATGCAGG TCAATTTAAT TCATATCTTA AGCGTATAGA TGAAGATCAC
TTTATTTTGT TAACGCATAT GCACGATTTA GCCAAGATGG AAGATAATAA GTTTTCTATT
TTGGATAAGG TTAGAACTGA ATCAAGTAGA AAGAATATGC CGTTGACCCT ATCAATTGGG
ATTGCTTTTG GATCTGAAAG CTTAAATGAG ATTGCTGACC AAGCACAATC TAATCTAGAT
TTAGCCTTAG GACGTGGGGG CGACCAAGTT GTTGTAAAAC AATCAGGTCA TGAAGCCCGC
TTTTATGGTG GAAAATCTAA TCCAATGGAA AAACGTACGC GAGTAAGAGC TCGAATGGTT
TCTCAAGCTT TGGTAGAATT ATTTAAAGGC GTTGATCACG TCTTTGTTCA AGGACATCGA
AATCCAGACT TAGATGCTAT CGGTTCAGCG ATTGGAATTG TTAAAATTGC TAGAATTCAT
GGTGTAAAAG CTAGCGTCGT AGTAGATGTT GACCATGTCA ATTATGATGT AGGACGCTTA
ATCGCTAAAA TGCAAGCTGC TGGAATTGAT AAGGATGTAT TTATTTCACC TAAAGATGCT
CTTGAAGCAG CAACGGATGA GTCACTTTTA GTTTTAACAG ATCATTCTAA GTACAGTATT
ACTTATGATC CTGAACTTTA TAAGCGCTTA AAGAATCGTT TAATCATTAT TGACCATCAC
CGTCGGGGGG AAGAATTCCC GGAAAACCCA ATGCTCGTAT ATATTGAACC ATATGCGTCC
TCAACGTGTG AGCTAGTAAC AGAAATGATT GAATACCAAC CGCAAGGTGG CGAGGGAGTC
TTAACTGACT TAGAAGCTTC AGCAATGCTA GCTGGTATTA CGGTTGATTC AAAAGAATTC
TCCTTGAGAA CAGGGACTAG AACTTTTGAT GCTGCAAGTT ACTTGCGATC AATTGGAGCA
GATACTCAGG TCGTATCTGA GCTTTTGAAG GAAAATATTG ATAATTACTT GCAAAGAAGT
CATTTAGTTT CTACTATTGA CATGATTGAA CCAAATATGG CGCTCTTAAT GGGAGAAGAT
AATAAGATCT ATGATCCAAT TATTACTGCT CAGGCTGCAG ATACTGCTTT ATCTCTTGAG
CATGTAGATG CCAGTTTTGC ATTAACTAGA CGCAGTAAAG ATGTAATTGG AATTTCGGCC
CGTTCAATGG GAAATGTTAA CGTTCAAGTA ATTATGGAGA AGCTAGGTGG CGGTGGTCAC
TTGTCTAATG CAGCAACTCA AATTAAGGGC GTAACAGTTG AAGAAGCTAA AGATAAGTTG
CTTGCTGCAA TTAATGAATA TCTTAAAGAA AATGAATAG
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| Protein sequence | MKGFLRKLEL PEFVKDTRLT ASLIIVLVLS LLGAIIGMLI SPLFGLAMVL LFILTVIFAV
YGIYVLAGNT NNYAANLSYR IKRGEQEAMI KMPLGIMLYD KDRQIQWINP YLQMYLHDKD
IIGSSISSVD KELAKYIDDA IKSNSKQNKI IKWGDRKFEM VVQDDLGVVY LLDITRYANI
EEKYKQERLA IGLIFIDNYD ELSQAMGDQN LTNMSSYVQT TLSKYAGQFN SYLKRIDEDH
FILLTHMHDL AKMEDNKFSI LDKVRTESSR KNMPLTLSIG IAFGSESLNE IADQAQSNLD
LALGRGGDQV VVKQSGHEAR FYGGKSNPME KRTRVRARMV SQALVELFKG VDHVFVQGHR
NPDLDAIGSA IGIVKIARIH GVKASVVVDV DHVNYDVGRL IAKMQAAGID KDVFISPKDA
LEAATDESLL VLTDHSKYSI TYDPELYKRL KNRLIIIDHH RRGEEFPENP MLVYIEPYAS
STCELVTEMI EYQPQGGEGV LTDLEASAML AGITVDSKEF SLRTGTRTFD AASYLRSIGA
DTQVVSELLK ENIDNYLQRS HLVSTIDMIE PNMALLMGED NKIYDPIITA QAADTALSLE
HVDASFALTR RSKDVIGISA RSMGNVNVQV IMEKLGGGGH LSNAATQIKG VTVEEAKDKL
LAAINEYLKE NE
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