Gene LGAS_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLGAS_0004 
SymbolrecF 
ID4438889 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLactobacillus gasseri ATCC 33323 
KingdomBacteria 
Replicon accessionNC_008530 
Strand
Start bp3242 
End bp4366 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content36% 
IMG OID639671866 
Productrecombination protein F 
Protein accessionYP_813859 
Protein GI116628687 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones51 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.60396e-25 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTATCTCG CAAACTTTGA ATTGAAAGAC TTTAGGAATT TTAAAGAATT AAAAACAGAT 
TTTGATCCTC ATGTAAATAT TTTTATTGGT CCGAATGCCC AAGGAAAAAC TAATTTACTT
GAGGCAATTT ATTTTTTAGC CCTAACACGA TCCCATCGAA CTAATAGCGA TAAAGAATTA
ATTCGCTTTG GCAGTAAATT TGCCGGTTTA CAAGGTCGAG TTCATAAAAG CCAACTGCAA
GTAGAGCTTA AATTACGTTT AACAGCTAAT GGAAAAAAGG CTTGGGTAAA TCGCTTGGAG
CAAAAGAAGC TTTCTGCTTA TGTTGGGCAA ATGAATGCAA TTTTGTTTTC TCCAGAAGAT
TTAGCCCTAG TTAAGGGAGC ACCATCTGTT AGACGGAGAT TTATGGATTT AGAGTTTGGG
CAGATTAATT CAGAATATCT ATATTTTTCA AGTCAGTATC GTCAGGTACT GCAACAGAGA
AACAATTATT TAAAGCAACT AAGCATCAAA AAAGCAAATG ATCAAGTTTT TTTAGATGTC
TTATCTGATC AGCTGGCAGG AATTGCAGCA GAGATAATAT CGCGAAGAAT AAAATACATC
AAAAAACTCA ATTCCTACGC TAAAGCTGCT CATAGCGAGA TTAGTGGTCA AGCTGAAAAA
TTGCAGATTT TTTACCGTCC ATCAGTTAAG GAAATTATCC CAGAGGATAA TGTAGAGACC
ATTTATCGAA AAGTTATTAC TAGTTATAAG AAAAATCGTC CTAATGAAAT TCGAAAGGGC
ACTACTCTAA GTGGCCCGCA TCGAGATGAC TTGGAGTTTT TAATTAATGA AAAAAATGCC
CATGATTTTG CATCTCAAGG ACAGCAACGG ACGATTTCTC TAAGCGTCAA GTTAGCCGAG
ATTCAATTAG TACATGAATT GACGCAAGAA TATCCAATTC TGTTATTAGA TGATGTGATG
AGTGAGTTAG ATCATCGAAG ACAGAGCCGT TTATTGAACT ATATTCATGG CAAAACGCAA
ACATTTATAA CAACGACAGA TTTAGAAGGT ATTTCTTGGG AAATCGTGAA GGAACCTAAG
GTTTATCACA TTTCTGCTGG AACGATCAGT GCAAAGGAGA GTTAA
 
Protein sequence
MYLANFELKD FRNFKELKTD FDPHVNIFIG PNAQGKTNLL EAIYFLALTR SHRTNSDKEL 
IRFGSKFAGL QGRVHKSQLQ VELKLRLTAN GKKAWVNRLE QKKLSAYVGQ MNAILFSPED
LALVKGAPSV RRRFMDLEFG QINSEYLYFS SQYRQVLQQR NNYLKQLSIK KANDQVFLDV
LSDQLAGIAA EIISRRIKYI KKLNSYAKAA HSEISGQAEK LQIFYRPSVK EIIPEDNVET
IYRKVITSYK KNRPNEIRKG TTLSGPHRDD LEFLINEKNA HDFASQGQQR TISLSVKLAE
IQLVHELTQE YPILLLDDVM SELDHRRQSR LLNYIHGKTQ TFITTTDLEG ISWEIVKEPK
VYHISAGTIS AKES