Gene LACR_1396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLACR_1396 
Symbol 
ID4433175 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLactococcus lactis subsp. cremoris SK11 
KingdomBacteria 
Replicon accessionNC_008527 
Strand
Start bp1307581 
End bp1308300 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content38% 
IMG OID639667124 
Productribosomal large subunit pseudouridine synthase B 
Protein accessionYP_809334 
Protein GI116512118 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.131517 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAATCA ATAAATATTT GGCCCATGCA GGAGTGGCAA GCAGACGTAA AGCAGAAGAA 
CTAATTTTGG CGGGAAAAGT GACAGTTAAT AATGTCCCGA TGACAAATTT AGGTTATCAA
GTTTCAACTG GAGATGTCGT CGAAGTTAAT GGAGTGGCAG TTTATAACGA AGAACCTGTT
TATTATCTAT TGAACAAACC AAGAGGTTAT ATTTCTTCTG TCCGTGATGA TAAAGGACGT
CAAACGGTGA TGGATTTAAT GCCTCAAGTT AAAGAACGTA TCTATCCAGT AGGGCGTTTG
GACTGGGATA CTAGTGGCTT ACTTTTACTC ACTAACGATG GTGAATTCAC AAATATGATG
ACTCACCCAA GTCACGGTGT TGATAAAGTT TATGTGGCCA AGGTTGAAGG ACAAGCGAAC
AAAGAAAACT TGCGTCCCTT AACACTTGGA ATGACGATTG AAGGTAAGAA AGTTAGCCCG
GCTCGTTATG AAATTATCAA ACAAGAAAAA ACAAAAAACC ATTCAATTGT TAGCTTAACG
ATTCATGAAG GTCAAAATCA TCAAGTTAAG AAGATGTTTG CTGCTGCTGG ACTTCCAGTA
CAAAAATTAA GTCGTATTCA ATATGGAACA CTTACATTGG ATGGACTGCC TACAGGACAA
TTCCGTCGTT TGAGTAAAAA AGAAGTTTCT CAATTGATTA ATGCTGCGCA AGGAAAATAG
 
Protein sequence
MRINKYLAHA GVASRRKAEE LILAGKVTVN NVPMTNLGYQ VSTGDVVEVN GVAVYNEEPV 
YYLLNKPRGY ISSVRDDKGR QTVMDLMPQV KERIYPVGRL DWDTSGLLLL TNDGEFTNMM
THPSHGVDKV YVAKVEGQAN KENLRPLTLG MTIEGKKVSP ARYEIIKQEK TKNHSIVSLT
IHEGQNHQVK KMFAAAGLPV QKLSRIQYGT LTLDGLPTGQ FRRLSKKEVS QLINAAQGK