Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LACR_1396 |
Symbol | |
ID | 4433175 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactococcus lactis subsp. cremoris SK11 |
Kingdom | Bacteria |
Replicon accession | NC_008527 |
Strand | - |
Start bp | 1307581 |
End bp | 1308300 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 639667124 |
Product | ribosomal large subunit pseudouridine synthase B |
Protein accession | YP_809334 |
Protein GI | 116512118 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.131517 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAATCA ATAAATATTT GGCCCATGCA GGAGTGGCAA GCAGACGTAA AGCAGAAGAA CTAATTTTGG CGGGAAAAGT GACAGTTAAT AATGTCCCGA TGACAAATTT AGGTTATCAA GTTTCAACTG GAGATGTCGT CGAAGTTAAT GGAGTGGCAG TTTATAACGA AGAACCTGTT TATTATCTAT TGAACAAACC AAGAGGTTAT ATTTCTTCTG TCCGTGATGA TAAAGGACGT CAAACGGTGA TGGATTTAAT GCCTCAAGTT AAAGAACGTA TCTATCCAGT AGGGCGTTTG GACTGGGATA CTAGTGGCTT ACTTTTACTC ACTAACGATG GTGAATTCAC AAATATGATG ACTCACCCAA GTCACGGTGT TGATAAAGTT TATGTGGCCA AGGTTGAAGG ACAAGCGAAC AAAGAAAACT TGCGTCCCTT AACACTTGGA ATGACGATTG AAGGTAAGAA AGTTAGCCCG GCTCGTTATG AAATTATCAA ACAAGAAAAA ACAAAAAACC ATTCAATTGT TAGCTTAACG ATTCATGAAG GTCAAAATCA TCAAGTTAAG AAGATGTTTG CTGCTGCTGG ACTTCCAGTA CAAAAATTAA GTCGTATTCA ATATGGAACA CTTACATTGG ATGGACTGCC TACAGGACAA TTCCGTCGTT TGAGTAAAAA AGAAGTTTCT CAATTGATTA ATGCTGCGCA AGGAAAATAG
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Protein sequence | MRINKYLAHA GVASRRKAEE LILAGKVTVN NVPMTNLGYQ VSTGDVVEVN GVAVYNEEPV YYLLNKPRGY ISSVRDDKGR QTVMDLMPQV KERIYPVGRL DWDTSGLLLL TNDGEFTNMM THPSHGVDKV YVAKVEGQAN KENLRPLTLG MTIEGKKVSP ARYEIIKQEK TKNHSIVSLT IHEGQNHQVK KMFAAAGLPV QKLSRIQYGT LTLDGLPTGQ FRRLSKKEVS QLINAAQGK
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