| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LACR_1304 |
|---|
| Symbol | |
|---|
| ID | 4433939 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactococcus lactis subsp. cremoris SK11 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008527 |
|---|
| Strand | - |
|---|
| Start bp | 1212752 |
|---|
| End bp | 1214878 |
|---|
| Gene Length | 2127 bp |
|---|
| Protein Length | 708 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 639667042 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_809252 |
|---|
| Protein GI | 116512036 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.01574 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAACTT CAACTAAAAC TAAAACTAGT ACAAAGAAAA AAACAACACG AAAGAAAGTG
ACTCCTGGGA AAAATCTCGT AATTGTCGAA TCGCCTGCTA AAGCCAAAAC AATTGAAAAA
TATCTTGGAC GAAACTATAA AGTTGTTGCT TCTGTCGGTC ATATTCGTGA TTTAAAAAAA
TCAACGATGT CTGTTGATAT CGAGAATGAT TATGAACCAC AATATATCAA TATTCGAGGT
AAGGCACCTC TAATCAACTC ACTCAAAAAA GAAGCCAAAG CTGCCAAAGC TGTCTATCTC
GCGAGTGACC CGGACCGTGA AGGAGAAGCA ATTTCATGGC ACTTAGCTCA CATCTTGAAT
CTTCCACTCG AAGAAAAAAA CCGTGTGGTC TTCAACGAAA TTACTAAAGA CGCCGTAAAA
AACGCCTTTA AGGAACCACG TCAAATTGAT GTAGATTTGG TTGATGCCCA ACAAGCACGT
CGCGTTCTTG ACCGCCTAGT TGGATATTCA ATCAGTCCAA TTCTTTGGAA AAAGGTCAAA
AAAGGACTTT CTGCAGGTCG AGTTCAATCG ATTGCTTTAA AATTAATCGT TGACCGCGAA
AATGAAATTA ATGCCTTTAT CCCAGAAGAA TACTGGTCAA TTGATGGGGA ATTCAAAAAA
GGAACCAAGA AATTTAATGC TTCATTTTGG GGAATTGATG GAAAAAAACA TCCATTAAAA
AATAACGAAG ATGTTATTAA AGTGATGGAG CGTTTAGACG GTCCTGATTT CAATGTCGAT
AAAGTTGAAA AGAAAGAACG TCGTAGAAAT TCACCACTCC CTTATACAAC AAGTTCAATG
CAACAAGATG TAGCAAATAA GCTTAAATTT CGTACCCGTA AAACAATGAT GGTTGCCCAA
CAGCTTTATG AAGGATTGAC ACTCGGAAGT CAAGGACATC AAGGTCTGAT TACCTATATG
CGTACCGACT CAACACGTAT TTCTCCAGTC GCACAAAGTG CAGCTCATAG CTATATTGCG
GAACAATTTG GCGAAAAGTA CAGCAAGCAC GGTTCAAAAG TTAAGAATGC CTCTGGTGCT
CAAGATGCCC ACGAAGCCAT TCGACCTTCA AATGTCTTTA ATACACCTGA GTCCATTGCT
AAATATTTGG ACAAAGACCA ATTAAAACTC TATACACTTA TTTGGAATCG TTTTGTTGCT
AGCCAAATGG TTGCAGCCAT TTTTGATACT GTGAAAGTGA ACCTTTCACA AAATGGTGTC
ATTTTTATCG CCAATGGTTC ACAGGTCAAA TTCGACGGTT ATCTTAGAAT CTACAACGAC
TCCGATAAAT CAAATATGCT TCCAGAAATG GAAGAAAACG AGACAGTGAA AAAAGCAAAT
GTTAAACCAG AACAACACTT CACACAACCA CCGGCTCGAT ATTCTGAAGC AACACTCATT
AAAACATTAG AAGAAAACGG TGTAGGCCGT CCCTCAACCT ATGCTCCAAC CTTAGAAACA
ATTCAAAAAC GCTATTATGT AAGATTATCA GCAAAACGAT TTGAACCTAC GGAACTTGGA
GAAATCGTTA ACAAGTTGAT TGTTGAATTT TTCCCTAACA TTGTTAATAC CGAATTCACT
GCCGAAATGG AAAAAGATCT TGATCAGGTT GAAGAAGGAA AACGCCAATG GATTGAGGTT
GTTGACCAAT TCTACAAACC TTTTGCTAAA GAACTTGAAA ATGCTGAAGA AGGTATGGAG
AAGATTCAAA TCAAGGATGA ACCCGCTGGT TTTGATTGTG ATGTGTGTGG AAGTCCAATG
GTCATTAAAT TAGGACGTTT CGGTAAGTTT TATGCTTGTA GTAACTTCCC AGATTGCCGA
AATACCAAGG CTATCGTGAA AGAAATTGGC GTAAAATGTC CACTTTGTCA TGAAGGAAAC
ATTATTGAAC GTAAAACTAA GAAAAATAGA ATTTTCTATG GTTGTGACCG CTATCCTGAA
TGTGAATTTA CAAGCTGGGA CAAACCAATT GGACGTGATT GTCCTAAATC TGGTCATTTT
CTCGTTGAAA AGAAAGTTCG TGGTGGTGGT AAACAAGTCG TGTGTTCAAA TGACGAGTGT
GACTATCAAG AAGAAAAACA AAAATAA
|
|---|
| Protein sequence | MPTSTKTKTS TKKKTTRKKV TPGKNLVIVE SPAKAKTIEK YLGRNYKVVA SVGHIRDLKK
STMSVDIEND YEPQYINIRG KAPLINSLKK EAKAAKAVYL ASDPDREGEA ISWHLAHILN
LPLEEKNRVV FNEITKDAVK NAFKEPRQID VDLVDAQQAR RVLDRLVGYS ISPILWKKVK
KGLSAGRVQS IALKLIVDRE NEINAFIPEE YWSIDGEFKK GTKKFNASFW GIDGKKHPLK
NNEDVIKVME RLDGPDFNVD KVEKKERRRN SPLPYTTSSM QQDVANKLKF RTRKTMMVAQ
QLYEGLTLGS QGHQGLITYM RTDSTRISPV AQSAAHSYIA EQFGEKYSKH GSKVKNASGA
QDAHEAIRPS NVFNTPESIA KYLDKDQLKL YTLIWNRFVA SQMVAAIFDT VKVNLSQNGV
IFIANGSQVK FDGYLRIYND SDKSNMLPEM EENETVKKAN VKPEQHFTQP PARYSEATLI
KTLEENGVGR PSTYAPTLET IQKRYYVRLS AKRFEPTELG EIVNKLIVEF FPNIVNTEFT
AEMEKDLDQV EEGKRQWIEV VDQFYKPFAK ELENAEEGME KIQIKDEPAG FDCDVCGSPM
VIKLGRFGKF YACSNFPDCR NTKAIVKEIG VKCPLCHEGN IIERKTKKNR IFYGCDRYPE
CEFTSWDKPI GRDCPKSGHF LVEKKVRGGG KQVVCSNDEC DYQEEKQK
|
|---|
| |