Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_70980 |
Symbol | betT1 |
ID | 4385079 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | + |
Start bp | 6324563 |
End bp | 6326113 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639328320 |
Product | choline transporter BetT |
Protein accession | YP_793849 |
Protein GI | 116053522 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 48 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 0.92652 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTCTTCG GCTCGACCGC ACTGATCCTG GTTCTGACCG CCGCCCTCAT CCTCTATCCC GACAGCGCCG GAGCCTTGCT CGGCCGCATC CAGGCGTGGC TGTCGCACAG CTTCGGCTGG TACTACATGC TGGCCATCGG CGCCTACCTG TTCTTCGTCG CCTGGGTGGC CTTCTCGCGC TTCGGCACCC TCAAGCTCGG CGAGGAGCAT GAAAAGCCGG ACTTCAGCTA CGGCGCCTGG GCCGGCATGC TGTTCTCCTC CGGGATCGGC ATCTCGCTGC TCTACTTCGC CGCATCCGAG CCGATCGACC ACCTCTACCA CCCGCCCGAA GGCGTTCCCG GCAGCCCTCA GGCGGCGCGC CAGGCGCTGC AACTGACCTT CCTCCACTGG GGCCTGCACG GTTGGGCGAT CTATGCCCTG GTCGGCCTCG CCGTCGGCTA TTTCGCCTAC CGCCATCGCC AGCCGCTGGC GTTGCGCTCG GCGCTCTATC CGATCCTCGG CGAGCGCTGG GTGAAAGGCG CCGCGGGCCA CGCGGTGGAT TGCTTCGGCA TCTTCGTCAC CCTTCTCGGG CTGGTGACCA ACCTGGGCAT CGGCGCCTTG CAGGTGTCGT CCGGTCTCGA GTACCTGACC GGCATGCCGC ACAGCAAAGG CACCCTGCTG GCGGTGATCC TCGTGATGAG CCTGGTCGCC ACCCTGGCGG CGGTCTCCGG TATCGAGAAA GGCATCCGCC GGCTGTCCAA CCTGAATATC GTGCTGTTCA GCTCGCTGCT GCTGTTCGTG CTGGTCTGCG GTTCGACCCT GGAACTGCTC AACGGCTTCG TACAGAACCT CGGCGACTAT CTCGACGGCC TGGTGCTGAA GACCTTCGAC CTCTACGTCT ACACCGGTGC CGGCGCCGGC AAGAGCGAGG AATGGCTGGG CCTGTGGACC CTGTTCTACT GGGCCTGGTG GATTTCCTGG GCGCCCTTCG TCGGTATGTT CATCGCCCGC ATCTCCCGTG GTCGCAGCGT GCGCGAACTG GTCTGCGGGG TGCTGCTGAT CCCGCTGGGC TTCACCCTGG CCTGGCTGTC GGTATTCGGC AACAGCGCCC TGGACCTGGT GATGAACCAC GGCGCGACCG ACCTGGGCAA GGCCGCGCTG GAACAGCCGT CGATGTCGAT CTACCTGCTG CTGGAACACT ATCCGCTGTC GAAGATCGTC ATCGGCCTGT CGATCTTCGT CGGCTTCGTG CTGTTCCTCA CCCCGGCGGA TTCCGGCTCG GTGATGCTGG CCAATCTCTC GCGCAGCGGC GGCGAGCTGG ACGAGGACGC GCCGAACTGG CTGCGCATCC TCTGGTCGGC CGTCGTCACG CTAGTCACCA TCGGCCTGCT GTTCGCCGGC AACTTCACGG CGATGCAAAC CGTCGTGGTG CTCGCCGGGC TACCGTTCTC GGCGGTGCTG ATCCTGTTCA TGTTCGGCCT GCACAAGGCC ATGCGCGCCG ACTACGAGGC CCAGGTCGGC GACCGCCGCA CCTACCAGCC AGTGCCGGCG CCAACCCAGC ACCAGACCTG A
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Protein sequence | MFFGSTALIL VLTAALILYP DSAGALLGRI QAWLSHSFGW YYMLAIGAYL FFVAWVAFSR FGTLKLGEEH EKPDFSYGAW AGMLFSSGIG ISLLYFAASE PIDHLYHPPE GVPGSPQAAR QALQLTFLHW GLHGWAIYAL VGLAVGYFAY RHRQPLALRS ALYPILGERW VKGAAGHAVD CFGIFVTLLG LVTNLGIGAL QVSSGLEYLT GMPHSKGTLL AVILVMSLVA TLAAVSGIEK GIRRLSNLNI VLFSSLLLFV LVCGSTLELL NGFVQNLGDY LDGLVLKTFD LYVYTGAGAG KSEEWLGLWT LFYWAWWISW APFVGMFIAR ISRGRSVREL VCGVLLIPLG FTLAWLSVFG NSALDLVMNH GATDLGKAAL EQPSMSIYLL LEHYPLSKIV IGLSIFVGFV LFLTPADSGS VMLANLSRSG GELDEDAPNW LRILWSAVVT LVTIGLLFAG NFTAMQTVVV LAGLPFSAVL ILFMFGLHKA MRADYEAQVG DRRTYQPVPA PTQHQT
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