Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_69690 |
Symbol | dapF |
ID | 4385062 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | + |
Start bp | 6215945 |
End bp | 6216775 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639328218 |
Product | diaminopimelate epimerase |
Protein accession | YP_793752 |
Protein GI | 116053427 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.0119345 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 0.292475 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTTTGC GCTTCACCAA GATGCATGGC CTGGGCAACG ACTTCATGGT CCTCGACCTG GTCAGCCAGC ACGCCCATGT GCAGCCCAAG CACGTCAAGC TCTGGGGCGA CCGCAACACC GGGGTCGGCT TCGACCAGTT GCTGATCGTC GAAGCCCCGA GCAGCCCCGA CGTCGACTTC CGCTACCGGA TTTTCAACGC CGACGGCTCC GAGGTCGAGC AGTGCGGCAA CGGCGCCCGC TGCTTCGCCC GCTTCGTTCA GGACAAGCGC CTGACGGTGA AGAAGAGCAT CCGCGTAGAA ACCAAGGGCG GCATCATCGA GCTGAATATC CGCCCGGACG GCCAGGTCAC GGTGGACATG GGTCCGCCGC GCCTGGCCCC GGCCGAGATA CCGTTCCAGG CCGAGCGCGA AGCCTTGTCC TATGAGATAG AGGTGAATGG CCAGCGCGTC GAACTGGCCG CGGTATCCAT GGGCAATCCC CATGGCGTGC TGCGCGTCGA GAACGTCGAC AGCGCACCGG TACACAGCCT CGGTCCGCAA CTGGAAGTCC ATCCGCGCTT CCCGAAGAAG GCCAACATCG GCTTCCTCCA GGTGCTCGAT CCGCACCATG CGCGCCTGCG CGTCTGGGAG CGCGGCGTCG GCGAGACCCA GGCCTGCGGC ACCGGCGCCT GCGCCGCGGC GGTTGCCGGG ATTCGCCAGG GCTGGCTGCA ATCGCCGGTG CAGATCGACC TCCCCGGCGG CCGCCTGCAC ATCGAGTGGG CAGGTCCCGG CCAGCCCGTT ATGATGACCG GGCCTGCCGT CCGCGTGTAT GAAGGCCAGG TCCGCCTGTA A
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Protein sequence | MLLRFTKMHG LGNDFMVLDL VSQHAHVQPK HVKLWGDRNT GVGFDQLLIV EAPSSPDVDF RYRIFNADGS EVEQCGNGAR CFARFVQDKR LTVKKSIRVE TKGGIIELNI RPDGQVTVDM GPPRLAPAEI PFQAEREALS YEIEVNGQRV ELAAVSMGNP HGVLRVENVD SAPVHSLGPQ LEVHPRFPKK ANIGFLQVLD PHHARLRVWE RGVGETQACG TGACAAAVAG IRQGWLQSPV QIDLPGGRLH IEWAGPGQPV MMTGPAVRVY EGQVRL
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