Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_58730 |
Symbol | pilA |
ID | 4382646 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 5233511 |
End bp | 5234050 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639327319 |
Product | type IV pilin structural subunit |
Protein accession | YP_792871 |
Protein GI | 116052556 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 0.279942 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 0.457351 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCTC AGAAAGGCTT TACCTTGATC GAACTGATGA TCGTGGTTGC GATCATCGGT ATTCTTGCTG CCGTCGCTTT GCCGGCATAT CAGGATTACA CCATTCGTGC TCGCGTGACA GAGGGGGTTG GTCTGGCTGC CAGCGCCAAG ACGCTTATTG GCGATAGCTC TGCCACTGCC GGTGAGCTAG CCGCTTCGGC AAGGGTCTGG AATGCTCAAG CCGGTAACGC CGGTGCTACC AGTAAGTATG TGACCTCTGT GCGAATTGCA GAGGCGACTG GTGAAATCAC TGTTACTTTC AATGCCACAA ACGTGGGTAA TATTCCGGCT GACTCTACCC TGGTATTTAC TCCCTATGTG CAGAATGCTG CCGGTGCCCC GACTCAATTG GGTGCCAGTT ATGCTGCCGG TGTGACTGGC TCTATTGACT GGGGTTGTGC ATCGGAATCC AATGCGGTTT CCAGTGGTCC CGACCGCAAT ATGCCTGCCC TGACTGCAGG TACCCTGCCG GCTCGTTTCG CTCCGAGCGA ATGCCGCTAA
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Protein sequence | MKAQKGFTLI ELMIVVAIIG ILAAVALPAY QDYTIRARVT EGVGLAASAK TLIGDSSATA GELAASARVW NAQAGNAGAT SKYVTSVRIA EATGEITVTF NATNVGNIPA DSTLVFTPYV QNAAGAPTQL GASYAAGVTG SIDWGCASES NAVSSGPDRN MPALTAGTLP ARFAPSECR
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