Gene PA14_55640 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPA14_55640 
SymbolsbcD 
ID4384614 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa UCBPP-PA14 
KingdomBacteria 
Replicon accessionNC_008463 
Strand
Start bp4957850 
End bp4959079 
Gene Length1230 bp 
Protein Length409 aa 
Translation table11 
GC content66% 
IMG OID639327073 
Productexonuclease SbcD 
Protein accessionYP_792626 
Protein GI116052315 
COG category[L] Replication, recombination and repair 
COG ID[COG0420] DNA repair exonuclease 
TIGRFAM ID[TIGR00619] exonuclease SbcD 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.000128845 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value0.404134 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCTCA TACATACCTC CGACTGGCAC CTGGGTCAGA CCCTGCACGG CCAGGACCGC 
GATCATGAGC ACGCGCGCTT CCTCGACTGG CTGCTACGCC AGCTGGAAGA GCAGCGCGCC
GATGTCCTGC TGATCGCGGG CGATATCTTC GACACGATCA ATCCACCGCT CAAAGCCCAG
GAGCGCCTCT ACGACTTCAT CGTCAGCGCC CATCGGCGGC TGCCGCGGCT GGAGATCGTG
ATGATCGCAG GCAACCACGA CTCCGGCGCG CGCATCGAAC TGCCCGCTCC GCTGATGAAA
CGACTGAACG CCCATGCCAT CGGCCGGATC GGCTGGATAG ACGAAAGCCT CGATAGCGAT
CGCCTGCTGC TGCCCCTGCA CGACGCGGAT GGCCAGGTCG CCGCCTGGTG CCTGGCCCTG
CCCTTCCTGC GTCCCGCCGA AGTCACCGGA GGCGGGCTCG GCGACGATTA CCTGGCCGGT
ATCCGCCAGG TGCACGAACG CCTGGTTGCC GCCGCGCAAG CCCGTCGCAC GCCGGGACAG
GCACTGGTCG CCGTCAGCCA CGCACACATG GCCGGCGGCT CGGTTTCCGA AGACTCCGAG
CGAAACCTGA TCATCGGCAA CGTCGAAGCG CTGCCCGCCA GCCTGTTTCC GGAGCAGATC
GCCTACGTAG CCCTCGGTCA TCTGCACAAG CCACAGAAAG TCGCCGGACA GGAGCGCATT
CGCTATAGCG GCTCGCCGCT GCCGCTGTCC TTCGCCGAAG TGAACTATCG CCACCAGGTC
CTCCTCGTCA CCCTGGAAGG TGAGCGCCTG AAGGATGTAC AGAGTCTCCC GGTGCCACGC
GCGGTGGAAC TGTTGCGCAT CGGCCCCGCG CCTCTTGGCG AGGTGCTCGA TCGAATCGGC
GAACTGGCCG AGGCCGACCT GCTGAACGAA CAGCGGCCCT GGCTGGAGGT CCGCGTCATG
CTGGATCAGC CGCAACCAGA CCTGCGCCAG CAGGTCGAGA GCGCCTTGCA GGGCAAGGCT
TGCCGCCTGG TGCGCATCGC CAGCGAATAC CAGCGCCGCG ACGAAGAACA GGCGCCGCTG
CTTGGGCTCG ACCAACTCAC CCCCCAGGAA CTGTTCAGCC GCGCCTGGGA AAGCGCCTAT
GGCTCCGGCC CGGATGCGCA GGCGTTGGAT GACTTCGCCA GCCTGCTGCA AAGCGTCGAA
CTGGCCACTG AAGAGCCCCC GGGGAAATAA
 
Protein sequence
MRLIHTSDWH LGQTLHGQDR DHEHARFLDW LLRQLEEQRA DVLLIAGDIF DTINPPLKAQ 
ERLYDFIVSA HRRLPRLEIV MIAGNHDSGA RIELPAPLMK RLNAHAIGRI GWIDESLDSD
RLLLPLHDAD GQVAAWCLAL PFLRPAEVTG GGLGDDYLAG IRQVHERLVA AAQARRTPGQ
ALVAVSHAHM AGGSVSEDSE RNLIIGNVEA LPASLFPEQI AYVALGHLHK PQKVAGQERI
RYSGSPLPLS FAEVNYRHQV LLVTLEGERL KDVQSLPVPR AVELLRIGPA PLGEVLDRIG
ELAEADLLNE QRPWLEVRVM LDQPQPDLRQ QVESALQGKA CRLVRIASEY QRRDEEQAPL
LGLDQLTPQE LFSRAWESAY GSGPDAQALD DFASLLQSVE LATEEPPGK