Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_54520 |
Symbol | |
ID | 4385205 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | + |
Start bp | 4833756 |
End bp | 4835039 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639326971 |
Product | porin |
Protein accession | YP_792530 |
Protein GI | 116048670 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0211699 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 0.223535 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCGACTT CCCTGCCGCA GGCCGCAAGG TCTGTACGTT TGTCCCGCAG CACCACCCTG ACCACCACCG CCGTCGTGCT CGCCGGCATC GCGCCCCTGG GCAACGCCGC CGGCTTCCTC GAAGACAGCA AGGCCAGCCT GGAAACCCGC AACTTCTACA TGAACCGCGA CTTCCGCGAC GGCCCCGGCC AGTCCAAGCG CGAGGAGTGG GCGCAAGGCT TCATCCTCAA CCTGCAGTCC GGCTACACCC AGGGCACCGT CGGCTTCGGC CTCGACGCCA TGGGCATGCT CGGCGTCAAG CTCGACTCCG GCCGCGGCCG CAGCGGTACC GGACTGCTGC CGAAGGATTC CGACGGCCGC GCGCCGGACA CCTACTCGAA ACTGGGCCTG ACCGCCAAGG TCAAGGTCTC GCAGAGCGAG CTGAAGGTCG GCACGCTGAT TCCGAAGCTG CCATCGGTAC AACCGAACAA CGGGCGGATC TTCCCGCAGA TATTCGAAGG TGCACTGCTC ACCTCGAAGG AGATCAAGGA CCTCGGCTTC ACCGCCGGGC GCCTGGAAAA GACCAAGATC CGCGACTCCA GCGACTCCGA GGACCTCGCG CTGAACGACA AGAACGGCCG CTTCGCCGGG GTCAGCGCCG ATCACTTCGA CCTCGGCGGA CTGGACTACA AGCTCACCGA CCAACTCACC GCCAGCTATC ACTACAGCAA CCTGCAGGAC GTCTACCGCC AGCACTTCGT CGGCCTGCTG CACAGCTGGC CGATCGGTCC CGGCGAACTG ACCAGCGACC TGCGCTTCGC CCGCAGCACC GACAGCGGCT CGGCCAAGGC CGGCGGCATC GACAACAAGT CGCTCAACGG CATGTTCACC TACAGCCTTG GCAACCATGC CTTCGGCGCG GCCTGGCAGC GAATGAACGG CGACGACGCC TTCCCCTACC TGGAAGGCAG CAACCCGTAC CTGGTCAACT TCGTCCAGGT CAACGACTTC GCCGGCCCCA AGGAGCGTTC CTGGCAACTG CGCTACGACT ACGACTTCGT CGGCCTCGGC ATTCCCGGCC TGACCTTCAT GACCCGCTAC GTCAAGGGCG ACAATGTCGA ACTCGCCGGG CAGAGCGGCG AAGGCCGCGA ATGGGAACGC AACACCGAAC TGCAGTACGT GTTCCAGAGC GGCGCGCTGA AGAACCTCGG AATCCGCTGG CGCAACGCGA CCTTCCGTTC CAATTTCACC CGCGACATCG ATGAGAACCG CCTGATCGTC AGCTATACCC TGCCGATCTG GTAA
|
Protein sequence | MSTSLPQAAR SVRLSRSTTL TTTAVVLAGI APLGNAAGFL EDSKASLETR NFYMNRDFRD GPGQSKREEW AQGFILNLQS GYTQGTVGFG LDAMGMLGVK LDSGRGRSGT GLLPKDSDGR APDTYSKLGL TAKVKVSQSE LKVGTLIPKL PSVQPNNGRI FPQIFEGALL TSKEIKDLGF TAGRLEKTKI RDSSDSEDLA LNDKNGRFAG VSADHFDLGG LDYKLTDQLT ASYHYSNLQD VYRQHFVGLL HSWPIGPGEL TSDLRFARST DSGSAKAGGI DNKSLNGMFT YSLGNHAFGA AWQRMNGDDA FPYLEGSNPY LVNFVQVNDF AGPKERSWQL RYDYDFVGLG IPGLTFMTRY VKGDNVELAG QSGEGREWER NTELQYVFQS GALKNLGIRW RNATFRSNFT RDIDENRLIV SYTLPIW
|
| |