| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_52270 |
|---|
| Symbol | ldhA |
|---|
| ID | 4383099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 4638585 |
|---|
| End bp | 4639574 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639326786 |
|---|
| Product | D-lactate dehydrogenase (fermentative) |
|---|
| Protein accession | YP_792349 |
|---|
| Protein GI | 116048850 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 51 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 0.339144 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATCC TGTTCTTCAG CAGCCAGGCC TACGACAGCG AGAGCTTCCA GGCCAGCAAC
CACCGGCACG GCTTCGAACT GCACTTCCAG CAGGCCCACC TGCAGGCGGA CACGGCGGTC
CTCGCCCAGG GCTTCGAAGT AGTCTGCGCC TTCGTCAACG ACGACCTCTC GCGGCCGGTG
CTGGAACGCC TGGCCGCCGG CGGCACGCGC CTGGTCGCCC TGCGCTCGGC CGGCTACAAC
CACGTCGACC TGGCCGCCGC CGAAGCGCTC GGCCTGCCGG TGGTGCACGT CCCGGCCTAT
TCGCCGCACG CTGTCGCCGA GCACGCGGTC GGCCTGATCC TGACGCTCAA CCGGCGCCTG
CACCGCGCCT ACAACCGGAC CCGCGAGGGC GATTTCTCGC TGCATGGGCT GACCGGCTTC
GACCTCCACG GCAAACGCGT CGGAGTGATC GGCACCGGAC AGATCGGCGA GACCTTCGCC
CGCATCATGG CCGGCTTCGG CTGCGAGCTG CTGGCCTACG ATCCCTATCC CAATCCGCGC
ATCCAAGCGC TCGGCGGCCG CTACCTGGCG CTCGACGCCC TGCTCGCCGA GTCCGACATC
GTCAGCCTGC ATTGCCCGCT GACCGCCGAC ACCCGCCACC TCATCGACGC GCAGCGCCTG
GCGACGATGA AACCCGGCGC GATGCTGATC AATACCGGCC GTGGCGCCCT GGTGAACGCC
GCGGCGCTGA TCGAGGCGCT GAAGAGCGGA CAACTGGGCT ACCTCGGCCT GGACGTCTAT
GAAGAGGAAG CGGATATCTT CTTCGAGGAT CGCTCCGACC AGCCCCTGCA GGATGACGTG
CTGGCACGCC TGCTGAGCTT CCCCAACGTG GTGGTGACCG CCCACCAGGC CTTCCTTACC
CGCGAGGCGC TGGCGGCGAT CGCCGACACC ACCCTGGACA ACATCGCCGC CTGGCAGGAC
GGGACGCCGC GCAATCGGGT CCGGGCCTGA
|
|---|
| Protein sequence | MRILFFSSQA YDSESFQASN HRHGFELHFQ QAHLQADTAV LAQGFEVVCA FVNDDLSRPV
LERLAAGGTR LVALRSAGYN HVDLAAAEAL GLPVVHVPAY SPHAVAEHAV GLILTLNRRL
HRAYNRTREG DFSLHGLTGF DLHGKRVGVI GTGQIGETFA RIMAGFGCEL LAYDPYPNPR
IQALGGRYLA LDALLAESDI VSLHCPLTAD TRHLIDAQRL ATMKPGAMLI NTGRGALVNA
AALIEALKSG QLGYLGLDVY EEEADIFFED RSDQPLQDDV LARLLSFPNV VVTAHQAFLT
REALAAIADT TLDNIAAWQD GTPRNRVRA
|
|---|
| |