| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_51450 |
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| Symbol | cupC3 |
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| ID | 4380017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 4572629 |
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| End bp | 4575148 |
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| Gene Length | 2520 bp |
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| Protein Length | 839 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639326713 |
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| Product | usher CupC3 |
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| Protein accession | YP_792277 |
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| Protein GI | 116048922 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.390609 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.000267992 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGCCATAT TTAGGAAAAG GTTCGACCTC AAGGTGTCCG TCTATTCCAG GTCTTCCTGT
CTCGTGGCCT TGGGATTGGC TTTGCCTGCC GTAACTTCCG CGGTGGAATT CAACGCCGAG
TTCCTGAACA ACGAGGGCGG GGCGCCCGTT GAACTGAAGT ATTTCGAGAA CGGCAACTCG
GTGTCGCCCG GCACTTACAG CGTCGACATT CATTTGAACC AGATCATGAT CCGGCGCGAA
GATGTCGTGT TCAGTGCCGA TCCCGACACC GGAAGCGTTC GCCCGATCAT TCGGATGGGC
CTGCTCAAGG AGATTGGGGT CGATATCGCC CGGCTGACTC GGGACAAGCT CATTCCGGCC
AACCTGGAAA ACAATACGCC CCTGAATGTC GCCGAACTCA TCCCCGGTGC ATCCGTAGAG
TTCGACGTCA ACAGCCTTTC CCTGCTGGTC AGCATTCCAC AGCTGTATGT ACAGCGGCAC
TCGCGTGGCT ATGTGGATCC CTCTCTTTGG GATGACGGCG TCACCGCGTT GTTTTCCAAC
TACCAGGCCA ACTTCACGCG CAACACCAAT TTTGGCCAGA ACAGCGATTA CCGCTACCTG
GGTCTGCGCA ACGGCTTCAA CCTGTTTGGC TGGCGCCTGC GCAACGACTC TTCCCTGAGC
GGAGGTACCG GCATGCGCAA CAAGTTCAGT AGCAACCGTA CCTATGTGGA ACGTGACATT
CGTGCCCTGA AGGGGACCTT GTCCCTCGGT GAGTTGTATA CCTCCGCTCA GGGGGATGCT
TTCGAGAGCG TGCGTATGCG CGGCGTGCAA CTGCAATCCG ATATCGGCAT GCTGCCCGAC
AACGAGATCA GCTATACCCC GGTGGTGCGC GGTATCGCTG AAACCAATGC GACGGTCGAG
GTGAGTCAGA ATGGCTTCGT GATCTATTCC ACCAACGTAC CGCCCGGTGC GTTCGAGATC
ACCGACATCT ATCCCAGCGG CTCCAATGGC GACCTGGAGG TCAAGATCAT CGAGGCGGAC
GGACGCCAGC GGTCCTTCAA GCAGTCCTAT TCCTACCTGC CGGTCATGAC CCGCAAGGGG
AACCTGCGCT ATGGCCTGGC CGCCGGTGAA TACCATAATG ACGGCCAGCC GTCGGTCAAC
CTGCTCCAGG GATCGGCTGT GTATGGCTTG TCCGACAGGG TTACCGGCTT TGGCGGCCTG
CTGGCTGCGG AGAAGTACAA TGCCACCAAC CTGGGCCTCG GCTTCAACAC GCCCCTGGGC
GGTCTTTCTG CGGACGTGAC CCATAGCCAG TCCCGCACGC GACGGGGTGG GCGCAACCAG
GGGCAGAGTC TGCGGCTTCT CTATTCCAAG ACCATCAACG CCACCGAAAC CAGCTTTACC
GTGGTGGGCT ATCGCTATTC CACGGAAGGC TACCGTACTC TCAGCCAGCA TATCGACGAC
ATGTCCGACG AGAGCTACCT CTATGGCTCA AGTTCCAGTC GGCAGAAGAG CCGCATAGAC
CTGACGGTGA ACCAGACGCT GTTCCGACGC AGTTCGCTCT ATCTCACGGC GGGCGAAACC
ACATATTGGA ATCGCCCCGG CAGCAGCCGT CGCGTGCAGT TCGGCTTCAG CAGCGGCATC
AAGCGCGCGA GCTACAGCCT GGCGGTTTCC CGTACCCAGG AGACGGGGTC GTTCGGGCGC
TCCGATACCC AGTTCACGGC CTCCGTCAGC ATCCCCTTGG GCGGTAGCGC ACGCTCCAGT
CAGGTATATG CCAATGCCGT GAGTTCACAG CATGGTGATT CGAGTCTGAA CACCGGTATC
TCCGGATACC TGGATGAAGC CAATGCGTTC AACTACAGCG CACAGGCCAA CTACAGCAAG
GACGGCGGCA ACTCCGGCAG CGTCGGCCTG GGTTGGGACA CGTCCAAGGC CAAGTTGTCC
GCCAATTACA GCCAGGGGCG CGACAACAAG CAGATCAACC TGGGAGCAAG CGGTTCGGTA
GTGGTGCATC CGGGGGGAGT GACCTTCGGC CAGCCGGTGG GGGAAACGTT CGGCCTGGTG
GAGGTTCCGG AGGTTGGCGG CGTCGGCCTC GACGGCTACT CTTCGGTTCG CACCGACGGC
CGTGGCTATG CCGTGCTCCC CTACATGCAA CCCTATCGTT ACAACTGGGT GAACCTGGAT
ACCAATACCC TTGGAAGCGA TACCGAGATC AGCGACAGCA CGCAAATGGC CGTGCCGACC
CGGGGCGCCG TGGTTGCCAA GCGTTTCTCC GCGGAGTCCG GTCGGCGGGT GCAGTTCGTC
CTGAGCATGG AGTCTGGAGG AAAGATTCCC TTCGGTGCAC AGGCATACGA CAAGGAAGAG
CGGGTCGTGG GAATGGTCGA CAACCTGTCC CGTTTGCTGG TGTTCGGTAT CGAGGACCAG
GGGCGCCTGT CCATTCGCTG GAGCGATGGC TCCTGTTCAG TCGACTATCA GTTGCCGCCC
AGGAACAAGG ACCTGACGTA CGAACGAGTT GCGCTCAGTT GCCGTCGGTC CTCGATCTGA
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| Protein sequence | MAIFRKRFDL KVSVYSRSSC LVALGLALPA VTSAVEFNAE FLNNEGGAPV ELKYFENGNS
VSPGTYSVDI HLNQIMIRRE DVVFSADPDT GSVRPIIRMG LLKEIGVDIA RLTRDKLIPA
NLENNTPLNV AELIPGASVE FDVNSLSLLV SIPQLYVQRH SRGYVDPSLW DDGVTALFSN
YQANFTRNTN FGQNSDYRYL GLRNGFNLFG WRLRNDSSLS GGTGMRNKFS SNRTYVERDI
RALKGTLSLG ELYTSAQGDA FESVRMRGVQ LQSDIGMLPD NEISYTPVVR GIAETNATVE
VSQNGFVIYS TNVPPGAFEI TDIYPSGSNG DLEVKIIEAD GRQRSFKQSY SYLPVMTRKG
NLRYGLAAGE YHNDGQPSVN LLQGSAVYGL SDRVTGFGGL LAAEKYNATN LGLGFNTPLG
GLSADVTHSQ SRTRRGGRNQ GQSLRLLYSK TINATETSFT VVGYRYSTEG YRTLSQHIDD
MSDESYLYGS SSSRQKSRID LTVNQTLFRR SSLYLTAGET TYWNRPGSSR RVQFGFSSGI
KRASYSLAVS RTQETGSFGR SDTQFTASVS IPLGGSARSS QVYANAVSSQ HGDSSLNTGI
SGYLDEANAF NYSAQANYSK DGGNSGSVGL GWDTSKAKLS ANYSQGRDNK QINLGASGSV
VVHPGGVTFG QPVGETFGLV EVPEVGGVGL DGYSSVRTDG RGYAVLPYMQ PYRYNWVNLD
TNTLGSDTEI SDSTQMAVPT RGAVVAKRFS AESGRRVQFV LSMESGGKIP FGAQAYDKEE
RVVGMVDNLS RLLVFGIEDQ GRLSIRWSDG SCSVDYQLPP RNKDLTYERV ALSCRRSSI
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