| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_43000 |
|---|
| Symbol | |
|---|
| ID | 4382922 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 3825042 |
|---|
| End bp | 3826622 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639326021 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_791586 |
|---|
| Protein GI | 116049609 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.333671 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCACC TGCTGTGGCC GAACTATATG CGCCCGCTGC CGGCTTTCAG CATTCTCCAG
TTCGACCCCC TGACCCGCCC GGGCGGGGCG CTGCGCGTGG AGCGCGATAC GCCGGTCGAG
AGCCGGCCGG TGGGCGAGGT CGCCTGTCGC TTCCGTACCT GCTACGCCAC CGAAGTCCTG
CCGCTGGTGC TGGAGGCGCT CAACTATTCG GTGACCGGCG AGGGTGCGCT GCTCGGCCTG
CGCCTGGCGA TGAACTGCGA CGGGCATCTC GGCGAGCTGG GCCTGAGTCG GCTGCGCCTG
CACCTGGCCG GCGAGCGCTA CATCAGCCAG ATGCTCTATC TGTGCCTGCT GCGCAACCTG
GAGAGCATCC AACTGATTCC GCTGGACGCC CATGGGCGGC CGCTGGATGG CGTGGCCGGC
AAGCCGATGT CGTTCCGCCT GACGGGCGAG CGGGTGCAGC CGGTGGGGTT CGCCGAAGAC
GAGGCGTTGA TTCCCTATCC GCTGAATACC TTCCGTGGCT ATCGCTACCT GCAGGAATAC
TTCGCGTTCC AGGACAAGTT CCTGTTCGTC GACGTGGATG GCCTTGACCT GCTCGGCGCT
CTGCCCGAGG AAACCCTCAA GCAGGTCCGC GGCCTCGAGT TGCGCTTCGA TATCCGCAAG
AGCGGCATCC AGCGCCTGCA CCCGACGCTG GAGAACGTCA AGCTGTACTG TACGCCGGTG
GCCAACCTGT TCCGCCACGA TGCGCTGCCG ATCCGCCTAG ACGGCAAGCA GGACGAATAC
CTGCTGATGC CGGCCGAATA CAGCCTGGAG GACTGCGGGG TGTTCTCGGT AGAGGGCGTC
ACCGGCTGGC GGCCGGGCGG GCTCGGCTAC CAGGCCTACG TGCCGTTCGA GTCCTTCGAG
CACGATCCCA GCTTCGACGT TCCCGAAGCA CGGCCCCACT ACAGCGTCCG GCAACGTACC
TCGTTGCTGC ACGATGGCCT GGACACCTAC CTGAGCTTCG GCATCCGCCA TCCCGAGCAG
ATCGAGACGC TGTCGGTGGA ACTGACCTGC ACCAACCAGA ACCTGCCCCA ACGGCTGCGC
CTGGGCGATA TCTGCGTCGC CTGCGAAGGC ACGCCGGAGT TCCTCGGTTT CCGCAATATC
ACCCCGGCGA CGCCGAGCTA CGCGCCGCCG CTGAACCGCG ATTTCCTCTG GAAACTGATC
AGCAACATGT CGCTCAACTA CCTGTCGCTG GCCAACGTCG ACGCGCTCAA GGTGATCCTC
GAAACCTACG ACCTGCCGCG CTACTACGAC CAGCATGCGG CGAAGGTCAG CAAGCGCCTG
CTGGGCGGGC TCAAGGCGGT CCGCCACGAG CATGTCGACC GCCTGCATCG GGGCCTGCCG
CTGCGCGGCT TGCGTACCGA GCTGACGATC GATCCGGAAG GCTACATCGG CGAGGGCGAC
CTGTTCGTGT TCGCTTCGGT TCTGAACGAA TTTTTCGCGC TTTACGCCAG CATCAACTCC
TACCACGAGT TGCGGGTGAG GAGCACACAG GGAGACGTGT ACCAATGGAA ACCGCGCATG
GGTTTGCAGC CCCTGCTGTA A
|
|---|
| Protein sequence | MMHLLWPNYM RPLPAFSILQ FDPLTRPGGA LRVERDTPVE SRPVGEVACR FRTCYATEVL
PLVLEALNYS VTGEGALLGL RLAMNCDGHL GELGLSRLRL HLAGERYISQ MLYLCLLRNL
ESIQLIPLDA HGRPLDGVAG KPMSFRLTGE RVQPVGFAED EALIPYPLNT FRGYRYLQEY
FAFQDKFLFV DVDGLDLLGA LPEETLKQVR GLELRFDIRK SGIQRLHPTL ENVKLYCTPV
ANLFRHDALP IRLDGKQDEY LLMPAEYSLE DCGVFSVEGV TGWRPGGLGY QAYVPFESFE
HDPSFDVPEA RPHYSVRQRT SLLHDGLDTY LSFGIRHPEQ IETLSVELTC TNQNLPQRLR
LGDICVACEG TPEFLGFRNI TPATPSYAPP LNRDFLWKLI SNMSLNYLSL ANVDALKVIL
ETYDLPRYYD QHAAKVSKRL LGGLKAVRHE HVDRLHRGLP LRGLRTELTI DPEGYIGEGD
LFVFASVLNE FFALYASINS YHELRVRSTQ GDVYQWKPRM GLQPLL
|
|---|
| |