Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_42690 |
Symbol | speE |
ID | 4381416 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 3797585 |
End bp | 3798445 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639325993 |
Product | spermidine synthase |
Protein accession | YP_791558 |
Protein GI | 116049637 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0421] Spermidine synthase |
TIGRFAM ID | [TIGR00417] spermidine synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 57 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 59 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCGATT ATCAGGAAAC TTTGTACCAG GGCTACGGCC AGCGCTTCAG CATCGACAAC ATGCTGCATG AGGTGCGCAC CGAGCACCAG CACCTGGTGA TTTTCGAAAA CGCCCGGATG GGCCGGGTGA TGGCGCTCGA CGGAGTGATC CAGACCACCG AGGCCGACGA GTTCATCTAC CACGAGATGC TCACCCACGT GCCGATCCTC GCCCACGGCG CGGCCCGGCG CGTGTTGATC ATCGGCGGTG GCGACGGCGG CATGCTGCGC GAGGTGGCCA AGCACAAGAG CGTCGAGCGG ATCACCATGG TCGAGATCGA CGGCACCGTG GTTGACATGT GTAAGGAGTT CCTGCCCAAC CACTCCCAGG GCGCCTTCGA CGACCCGCGG CTGAACCTGG TGATCGACGA CGGCATGCGC TTCGTGGCTA CCACGGAAGA ACGCTTCGAC GTGATCATCT CCGACTCCAC CGACCCGATC GGCCCTGGCG AGGTGCTGTT CTCCGAGAAC TTCTACCAGG CCTGCCGGCG CTGCCTGAAC GAGGGCGGCA TCCTGGTCAC CCAGAACGGC ACGCCGTTCA TGCAACTGGA GGAAGTGCGC ACCACCGCCG CGCGTACCGA CGGGCTGTTC GCCGACTGGC ATTTCTACCA GGCGGCGGTG CCGACCTATA TCGGCGGCGC CATGACCTTC GCCTGGGGTT CGACTCGCGA AGGCCTGCGT CGCCTTCCGC TGGAAACGCT GCGCCAGCGC TTCCGCGACA GCGGCATCGC CACCCGCTAC TACAACGCCG ATATCCACCT GGGCGCGTTT GCTCTGCCGC AGTACGTGCT GCAGGCCATC GGCAAGCAGG ACAACGACTG A
|
Protein sequence | MSDYQETLYQ GYGQRFSIDN MLHEVRTEHQ HLVIFENARM GRVMALDGVI QTTEADEFIY HEMLTHVPIL AHGAARRVLI IGGGDGGMLR EVAKHKSVER ITMVEIDGTV VDMCKEFLPN HSQGAFDDPR LNLVIDDGMR FVATTEERFD VIISDSTDPI GPGEVLFSEN FYQACRRCLN EGGILVTQNG TPFMQLEEVR TTAARTDGLF ADWHFYQAAV PTYIGGAMTF AWGSTREGLR RLPLETLRQR FRDSGIATRY YNADIHLGAF ALPQYVLQAI GKQDND
|
| |