Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_40320 |
Symbol | xqhA |
ID | 4382358 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 3601871 |
End bp | 3604201 |
Gene Length | 2331 bp |
Protein Length | 776 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639325802 |
Product | secretion protein XqhA |
Protein accession | YP_791371 |
Protein GI | 116049822 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.386319 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCACGTT GTAGTACCCG TTCCGCCCAG CGCCTGTCTC CGCTGTTCCT GGTCCTGTCG CTGGCCGTCC TCGGCCTGGC GCCGCCGGTC CATCCGGCAC CTGCCGCGAC TGCCGCCGCG CAAGAGGAAG AGCAGTGGAC GATCAACATG AAGGATGCCG AGATCGGCGA CTTCATCGAG CAGGTATCGA GCATCAGCGG CCAGACCTTC GTCGTCGATC CGCGGGTGAA GGGACGGGTC ACGGTGGTAT CCCAGGCGCG GCTCAGCCTG GCGGAGGTCT ACCAACTGTT CCTTTCGGTG CTCGCCACCC ATGGCTACGC GGTGCTGCCG CAGGGCGACC AGGCGCGTAT CGTGCCGAAC ATGGAGGCAC GCCAGGACGC CGCGCAGAAG ACCGTCCGCG ATGGGCCGGG CAGCCTGGAG ACGCGGGTGG TCCAGGCGCA GCAGACCTCG GTGGCGGAAC TGATCCCGAT GATCCGGCCG CTGGTCCCGG CCCATGGCCA TCTGGCCGCC GTGCCGTCGG CCAACGCGCT GATCGTCAGC GACCGCCGCG CCAACATCGA GCGCATCGAG GCGATCGTGC GCAGCCTCGA CCGGGCCGGC GAACATGACT ACAGCATCTA CGACATGCGC CATGCCTGGG TCGCGGAAAT CGCCGAGGTG CTCGATCGCA GCGTCACCCC GGCCGCCGGG AAGAGCGCCG CCACCGTCCA GGTCCTCGCC GACAGCCGCA GCAACCGCCT GGTCCTGCTC GGGCCGCCGC AGGCGCGAGC GCGCTTGCTG CGGCTGGCGC AGTCGCTCGA CGTCCCCTCG TCGCGGTCGG CGAACAGCCG GGTGATCCGC CTGCGCCATG GCGACGCCAA GACCCTCGCC GCCACCCTCG GGGAGATCGG CGAATCGCTG CGCGGCGAGC GGGGCCAGGA TGGACGGGGA AGCGGCAAGC GCGGCCTGCT GGTGCGCGCC GACGAATCGC TGAATGCCCT GGTGATCCTC GCCGACCCGG AGGATGTCGG TCTGCTCGAG GACATCGTCC GCCAGCTCGA CGTGCCGCGT GCGCAACTGT TGGTGGAGGC GGCGATCGTC GAGCTGTCCG GCGAGATCGG CGACGCCCTC GGGGTGCAAT GGGCGCTGCG TAGCGGGCAT GTCGCCGGCG GCGCTGGCTT CGCCGACAGC GGGTTGTCCA TCGGCACCCT GCTAGGCGCG TTGCAGGCCG GCAAGCCGCC GGCAGAGCTG CCCGACGGTG CGATAGTCGG CCTCGGCAGT CGCGATTTCG GCGCACTGGT CACCGCGCTG AGCCGCAATA GCCGCAGCAA CCTGCTGTCG ACGCCGAGCC TGCTGACCCT GGACAACCAG AAGGCGGAAA TCCTGGTCGG CCAGAACGTG CCGTTCCAGA CCGGCAGCTA CACCACCAGC GCCAGCGGTT CGAGCAATCC GTTCACCACT GTCGAGCGCA AGGATATCGG GGTGACCCTC AAGGTCACGC CGCACATCGG CGAGGACCGC ATGCTGCGCC TGGAGATCGA GCAGGAAATA TCCTCCATCG CGCCAACCGC CACCTTGGCG GCGAAGGCGG TGGACCTGGT GACCAACAAG CGCTCGATCA AGAGCACCGT ACTGGCCGAC GACGGCCAGG TCATCGTCCT CGGCGGACTG ATCCAGGACG ACCTGCTGCG CAGCGATTCG CGGGTACCGC TGCTGGGCGA CATCCCCGGC GTCGGCCGGC TGTTCCGCTC GTCCCGCGAG ACCCGGGTGA AGCGCAACCT GATGGTCTTC CTGCGACCGA GCATCGTCCG CGATGCCGCC GGCCTGGAGC GCATCAGCCA TGGCCGTTAC CGTTCCATCC AGTTGCTGCG CGGTGCCGCC GGCGAACCGG TACGCCCGCT GTTCGAGGAT GCCGGCGCCA TCGACCTGCG TCCCGCCGCC CAGGTCGCAC CGGCACCTAT TGGCTCGCCG CGCAGCTATC CGGCTCCAGC CCCGGTGCTG ATGGAGAAGC CGCGCCTGGC GGACCCGGCG TCCCTGGGCG ACGGTCGCGG CGGCGAGGTG CTGGAGGTTC GCCAGGGCAC GCACGCGCCG CAGCCGCCGT CACCCCAGCG CTACGCCGTG CGATTGGTCG AGGGCAGCAG CGAAGCCTTC ATGCGCGCGC TGATCGAGCG GCATCCGGGC CTGTCGTTGC GTTTGCGCCG CGAACTGCGC GATGGCCAGG AGCTGTTCGC GGTGGAGCGG GGCGACTACC TCGACCCGGA GCAGGCACGC CGGGCCCTGG CGGAACTGCC CGAAAGCCTG CCGCGAGGGA AGGCGCGGGT GATTGCGCAT ACGCCGGGAA GCGCCCTGTG A
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Protein sequence | MPRCSTRSAQ RLSPLFLVLS LAVLGLAPPV HPAPAATAAA QEEEQWTINM KDAEIGDFIE QVSSISGQTF VVDPRVKGRV TVVSQARLSL AEVYQLFLSV LATHGYAVLP QGDQARIVPN MEARQDAAQK TVRDGPGSLE TRVVQAQQTS VAELIPMIRP LVPAHGHLAA VPSANALIVS DRRANIERIE AIVRSLDRAG EHDYSIYDMR HAWVAEIAEV LDRSVTPAAG KSAATVQVLA DSRSNRLVLL GPPQARARLL RLAQSLDVPS SRSANSRVIR LRHGDAKTLA ATLGEIGESL RGERGQDGRG SGKRGLLVRA DESLNALVIL ADPEDVGLLE DIVRQLDVPR AQLLVEAAIV ELSGEIGDAL GVQWALRSGH VAGGAGFADS GLSIGTLLGA LQAGKPPAEL PDGAIVGLGS RDFGALVTAL SRNSRSNLLS TPSLLTLDNQ KAEILVGQNV PFQTGSYTTS ASGSSNPFTT VERKDIGVTL KVTPHIGEDR MLRLEIEQEI SSIAPTATLA AKAVDLVTNK RSIKSTVLAD DGQVIVLGGL IQDDLLRSDS RVPLLGDIPG VGRLFRSSRE TRVKRNLMVF LRPSIVRDAA GLERISHGRY RSIQLLRGAA GEPVRPLFED AGAIDLRPAA QVAPAPIGSP RSYPAPAPVL MEKPRLADPA SLGDGRGGEV LEVRQGTHAP QPPSPQRYAV RLVEGSSEAF MRALIERHPG LSLRLRRELR DGQELFAVER GDYLDPEQAR RALAELPESL PRGKARVIAH TPGSAL
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