| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_36910 |
|---|
| Symbol | ligD |
|---|
| ID | 4385768 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 3287787 |
|---|
| End bp | 3290309 |
|---|
| Gene Length | 2523 bp |
|---|
| Protein Length | 840 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639325538 |
|---|
| Product | ATP-dependent DNA ligase |
|---|
| Protein accession | YP_791107 |
|---|
| Protein GI | 116050079 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
|---|
| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0564843 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAGCA GCAAGCCGCT CGCCGAGTAC GCCCGCAAGC GCGATTTCCG CCAGACCCCG
GAGCCCAGCG GCCGCAAGCC TCGCAAGGAC AGCACCGGTC TGCTCCGCTA TTGCGTCCAG
AAGCACGACG CCAGCCGCCT GCACTACGAC TTCCGCCTGG AGCTGGATGG CACCTTGAAG
AGCTGGGCGG TGCCCAAGGG GCCGTGCCTC GACCCGGCGG TGAAGCGGCT CGCGGTGCAG
GTTGAGGACC ATCCGCTGGA CTATGCCGAT TTCGAAGGCA GCATCCCCCA GGGGCACTAC
GGCGCCGGCG ATGTCATCGT CTGGGACCGA GGCGCCTGGA CGCCTCTGGA CGATCCGCGC
GAGGGCCTGG AAAAGGGCCA TCTCAGCTTC GCCCTGGATG GCGAGAAACT CTCCGGGCGT
TGGCACCTGA TCCGCACCAA CCTGCGCGGC AAGCAGCCCC AGTGGTTCCT GGTCAAGGCC
AAGGACGGCG AGGCGCGCAG CCTGGATTGC TTCGACGTGC TGAAGGAGCG TCCCGACAGC
GTGCTCAGCG AGCGTACGCT GCTGCCCCGC CATGGCGAAG CCGCCACGCC CGCGGCCAGG
CCGGCGCGAC GCGGCAAGAG CGGGGGGAAG ACGCCGATGC CCGAATGGAT CGCCCCCGAG
CTGGCCAGCC TGGTCGAGCA GCCTCCGCGA GGGGAGTGGG CCTACGAACT CAAGCTGGAC
GGCTATCGGC TGATGAGCCG CATCGAAGAC GGCCACGTGC GCCTGCTGAC CCGCAACGGC
CATGACTGGA CCGAACGCCT GCCGCACCTG GAGAAGGCAT TGGCCGGGCT CGGTCTGCAG
CGCAGTTGGC TGGACGGCGA ACTGGTGGTC CTCGACGAGG AGGGTCGACC GGACTTCCAG
GCCCTGCAGA ACGCCTTCGA GGAAGGTCGC GGCGAGAACA TCCTGTACGT CCTCTTCGAC
CTGCCGTACC ACGAAGGCGA GGATCTGCGC GATGTCGCCC TGGAGGAGCG CCGCGCGCGC
CTGGAGGCGC TGCTGGAAGG GCGCGACGAA GACCCGCTGC GGTTCTCCGC GACGCTCGCG
GAAGACCCCC GCGACCTGCT GGCCAGCGCC TGCAAGCTCG GTCTCGAAGG CGTGATCGGC
AAGCGTCTGG GCAGCGCCTA CCGTTCGCGC CGCAGCAACG ACTGGATCAA GCTGAAGTGC
CAGTTGCGCC AGGAGTTCGT GATCGTCGGC TATACCGAGC CGAAGGGCTC TCGCCGGCAT
ATCGGCGCCT TGCTGCTCGG CCTCTACAGC CCTGACGAGG AGCGCCGGCT GCGCTATGCC
GGCAAGGTCG GCAGCGGCTT CACCGCGGCC AGCCTGAAGA AGGTCCGTGA GCGCCTGGAA
CCCCTCGCGG TCCGCTCCAG CCCATTGGCG AAGGTGCCGC CGGCGCGCGA GACCGGGTCG
GTGCAGTGGG TGCGCCCGCA ACAGCTGTGC GAGGTTTCCT ATGCGCAGAT GACCCGTGGC
GGGATCATCC GCCAGGCAGT GTTCCACGGC TTGCGCGAAG ACAAGCCGGC GCGCGAGGTG
ACCGGCGAGC GTCCCGCCGG CCCGCCGCCG CTGCGCGGCG CGCGCAAGGC CGGCGCCGGT
GCGTCGCGGG CGGCCACCGC CGGCGTGCGC ATCAGCCATC CGCAGCGGCT GATCGACCCG
TCGATCCAGG CCAGCAAGCT GGAACTCGCC GAGTTCCATG CGCGCTACGC CGACCTGCTC
CTGCGCGACC TGCGCGAGCG CCCGGTGTCG CTGGTGCGCG GCCCCGACGG AATCGGCGGC
GAACTGTTCT TCCAGAAGCA CGCGGCGCGC CTGAAGATCC CCGGCATCGT CCAGCTCGAC
CCGGCGCTCG ATCCCGGTCA TCCGCCGCTG TTGCAGATCC GCAGCGCCGA GGCGCTGGTC
GGCGCGGTGC AGATGGGCAG CATCGAATTC CATACCTGGA ACGCCAGCCT GGCCAACCTG
GAGCGGCCCG ACCGTTTCGT CCTCGACCTC GACCCGGACC CGGCGCTGCC GTGGAAGCGC
ATGCTCGAAG CGACCCAGCT GAGCCTGACG TTGCTCGACG AGCTGGGCCT GCGCGCCTTC
CTCAAGACCA GCGGCGGCAA GGGCATGCAC CTGCTGGTGC CGCTGGAGCG CCGGCATGGC
TGGGACGAGG TCAAGGATTT CGCCCAGGCC ATCTCCCAGC ACTTGGCGCG CCTGATGCCG
GAGCGTTTCT CGGCGGTTTC CGGGCCGCGC AACCGGGTCG GCAAGATCTT CGTCGACTAC
CTGCGCAACA GCCGCGGCGC CAGCACCGTG GCCGCCTACT CGGTGCGCGC CCGCGAAGGG
TTGCCGGTGT CGGTACCGGT GTTCCGCGAG GAACTCGACT CGCTGCAGGG CGCCAACCAA
TGGAACCTGC GCAGTCTGCC GCAGCGCCTC GACGAACTCG CCGGCGACGA TCCCTGGGCC
GACTACGCCG GCACCCGCCA GCGCATCAGC GCGGCCATGC GGCGCCAGCT CGGGCGCGGC
TGA
|
|---|
| Protein sequence | MPSSKPLAEY ARKRDFRQTP EPSGRKPRKD STGLLRYCVQ KHDASRLHYD FRLELDGTLK
SWAVPKGPCL DPAVKRLAVQ VEDHPLDYAD FEGSIPQGHY GAGDVIVWDR GAWTPLDDPR
EGLEKGHLSF ALDGEKLSGR WHLIRTNLRG KQPQWFLVKA KDGEARSLDC FDVLKERPDS
VLSERTLLPR HGEAATPAAR PARRGKSGGK TPMPEWIAPE LASLVEQPPR GEWAYELKLD
GYRLMSRIED GHVRLLTRNG HDWTERLPHL EKALAGLGLQ RSWLDGELVV LDEEGRPDFQ
ALQNAFEEGR GENILYVLFD LPYHEGEDLR DVALEERRAR LEALLEGRDE DPLRFSATLA
EDPRDLLASA CKLGLEGVIG KRLGSAYRSR RSNDWIKLKC QLRQEFVIVG YTEPKGSRRH
IGALLLGLYS PDEERRLRYA GKVGSGFTAA SLKKVRERLE PLAVRSSPLA KVPPARETGS
VQWVRPQQLC EVSYAQMTRG GIIRQAVFHG LREDKPAREV TGERPAGPPP LRGARKAGAG
ASRAATAGVR ISHPQRLIDP SIQASKLELA EFHARYADLL LRDLRERPVS LVRGPDGIGG
ELFFQKHAAR LKIPGIVQLD PALDPGHPPL LQIRSAEALV GAVQMGSIEF HTWNASLANL
ERPDRFVLDL DPDPALPWKR MLEATQLSLT LLDELGLRAF LKTSGGKGMH LLVPLERRHG
WDEVKDFAQA ISQHLARLMP ERFSAVSGPR NRVGKIFVDY LRNSRGASTV AAYSVRAREG
LPVSVPVFRE ELDSLQGANQ WNLRSLPQRL DELAGDDPWA DYAGTRQRIS AAMRRQLGRG
|
|---|
| |