| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_36000 |
|---|
| Symbol | prpR |
|---|
| ID | 4381387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 3204291 |
|---|
| End bp | 3205712 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639325460 |
|---|
| Product | propionate catabolism operon regulator |
|---|
| Protein accession | YP_791029 |
|---|
| Protein GI | 116050154 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0249569 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000000000000235786 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | CTGAGCGAAG ACACTGCGCG CAAGGCGCTC GAGGAAGCCA TGGGAGTCCT CGACAGCCAG
CGCCTGGAGA TCGCCAAGCG GCGGCATCTG GACGCGGTGC TGCAACACAT TCCAAGCGGT
GTGGCAGCGG TCGACAACCA GGGTGTGGTG CAATCGCTCA ACCCTGCCCT TGCCCAGTTG
CTGGAGTTGC CGGTCAGCTC GGCTCTGGGT CGACCGTTAC AGCAGCTATG CCCGGAGCTT
GACCTGCAAC AGGCGCTAGA GGATGGCGGT GGCGAGGAAA ACCGGGTGAT CCGGCTGGGC
TCGCACGCCG TGGTCAGCAA TCTCCTGCCG ATCCTGGAGA ATGGCGAGCG TACCGGCCTG
GTGCTCACCT GCCAGGACAT CACCGCCGTG CAGCGCGCGG ATCAACGCAT CCGCTCCACT
CGCCGTCCAG GTGCCTTCAC CGCGCGTTAC CGGCTCGAAC AACTCAACGG CGCGAGCAAG
GCCAACCGTG AGATGTTGCA GCTGGCCAAG CGCTTTGCCG CCAGCCATTC GACCATCCTG
ATCACTGGCG AAAGCGGCAC CGGCAAGGAA CTGCTCGCCC AAGGGATCCA TAACGAGAGC
CCTCGCCGGC ACGGGCCTTT CGTCGCCATC AACTGCGCGG CGTTTCCCGA GTCGCTACTG
GAAAGCGAAC TGTTCGGCTA CGAGGAAGGG GCCTTCAGCG GTTCGCGCAA AGGCGGCAAG
CCCGGCCTGT TCGAGGCGGC GCACCGTGGC ACGCTGTTCC TCGACGAGAT CGGCGACATG
CCTGTGTCGC TGCAGACTCG CCTCCTTCGT GTATTGCAGG AGCGAGAGGT CTTGCGCCTG
GGCGGCACCG AGCCGATCTC CATCGACGTG CGCATCGTCG CCGCCACCCA CAAGGACCTG
GGGGGCGCCA TGAAGGATCG CGAGTTTCGC ACCGACCTGT ATTACCGGCT GAATATCCTG
CGCTTGCAGA CCACGCCCCT GCGCGAGCGG CCCGAGGACA TCCCTCTGAT TTGCCAGGGA
ATCAGCCAGC GCCTGCTGGT CCAGGGCCAG CCACCGGGTT CCGCAGGCAT AACGACGCTC
CTGCTACCCT ACCTCGTCCG CCATTCCTGG CCCGGAAACG TCAGGGAACT GGAGAATGTC
ATCGAACGGG CGATGCTCTC CGCCAGCGAA ATCTTCCATG AGCACGGCGT GGATGAGCAT
TACCTGGCTC GCGTGCTGCC CGAGCTATTC GAAGGCCAGC CTCAGCCCAG GTCCCGGAAA
GAGCCATCGC GCACAAAGGA TTTGCACGCC ATCGGCAAAA CCGCGCAGTT GCGCTACATA
CAGGAGACGC TGGACAGCTG CCAGGGCAGC CTTGACGAGG CTGCGCGTCG GCTCGGGATC
AGCCGGACCA CGCTGTGGCG GCGGCTTCGT TCGGCACGCT GA
|
|---|
| Protein sequence | MSEDTARKAL EEAMGVLDSQ RLEIAKRRHL DAVLQHIPSG VAAVDNQGVV QSLNPALAQL
LELPVSSALG RPLQQLCPEL DLQQALEDGG GEENRVIRLG SHAVVSNLLP ILENGERTGL
VLTCQDITAV QRADQRIRST RRPGAFTARY RLEQLNGASK ANREMLQLAK RFAASHSTIL
ITGESGTGKE LLAQGIHNES PRRHGPFVAI NCAAFPESLL ESELFGYEEG AFSGSRKGGK
PGLFEAAHRG TLFLDEIGDM PVSLQTRLLR VLQEREVLRL GGTEPISIDV RIVAATHKDL
GGAMKDREFR TDLYYRLNIL RLQTTPLRER PEDIPLICQG ISQRLLVQGQ PPGSAGITTL
LLPYLVRHSW PGNVRELENV IERAMLSASE IFHEHGVDEH YLARVLPELF EGQPQPRSRK
EPSRTKDLHA IGKTAQLRYI QETLDSCQGS LDEAARRLGI SRTTLWRRLR SAR
|
|---|
| |