Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_35790 |
Symbol | |
ID | 4382104 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 3183178 |
End bp | 3184587 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 639325442 |
Product | putative homospermidine synthase |
Protein accession | YP_791011 |
Protein GI | 116050172 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG5310] Homospermidine synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000000430191 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 6.17783e-20 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGATTTTT CAATTAATCC CCCCCAGCGA ATTGTCTTTG TGGGACTAGG AACGATTGCC CAGTCCTTCC TTCCTCTCCT TTCTAAGGTT CACGACTTAT CTACTTTAGA AATCTACGCG ATCGATCCAA AAACACCACC GCTTATTGAG TACTTTGCTA ACAGTTTTGG CTTAAAATTT ATCAACTCTG CAATTGATCA AATCAACTAT CGCGACATTC TTGTGCCGAT TCTTGGTGAA GGGACGGTTC TAATAAATCT ATCAACCGAT GTCTCAAGTC TTGCCCTGAT AGAATTATGC CGCTCCGCAG GGGCTCTTTA TTTAGACACA TGCATTGAGC CGTGGAAGGG CGGATATGAT GACCCAACCA TACCACTGCA TAAGCGAACT AACTATCACT TAAGAGAACA AATGCTGTCT CTGAAAAAGA GGCTAGGCTC AGGGGTGACG GCTCTCGTGG CGCATGGCGC GAATCCTGGG TTGGTATCCC ACTTCGTTAA ACGTGCTCTT TTAGATTTAG CGGAAGAGAT ATTGGGTGAT TGTAAAAAGC CCTCTAATAA AGAGCAGTGG GCTATCCTAA GCCAAAGATT GGGTGTCAAA GTAATCCATG TCGCAGAGTA CGACTCGCAA ATTTCTCAGA AATCTAGGGA GAGGGGTGAG TTCGTAAATA CTTGGTCAGT GCATGGGTTC ATAAGTGAGT CGCAACAACC GGCAGAGTTG GGCTGGGGAA GTCACGAGCG AAGTCTACCC ACGGATGCGT CAATGCATAC AGATGGATGC GGAGCAGCAA TCTATATTGA GAAGCCAGGG GCCTCTGTTA GAGTTAAGAC ATGGACGCCA TTTAACGGCC CTAGCTTAGG TTATTTGGTA ACTCATCACG AGGCAATTTC AATTGCTGAC TTTTTGACGC TCAGAACTGC CGATGAGACA TATAGACCAA CTGTCCATTA TGCCTATCGC CCAAGCGATG AAGCAATTCT CTCTGTACAT GAATGGTTCG GCAATGATTG CATGACTCCA GAAAAGACAA AAGTACTTCG TCCTGGTGAT ATCTTGTCGG GTTCTGATTA CCTCGGTGTT CTTCTTATGG GGCACGAAAA ATCTAGTTAT TGGTATGGAT CTATCTTAAG CATCGAAAAG GCCAAGGAAC TTGCCACTCT CAACACTGCA ACAACGTTAC AGGTAGCAGC CGGAGTTCTT TCCGGTTACT TATGGATCCT GAGCCATCCG TCGGCAGGAA TAATTGAAGC CGAAGACATG GATCATGAAG TGGCACTATC TTATATTTCA CAGTATCTAG GCGAACTAAA AGGGGTTTAT TCGGACTGGA ATCCTACCAA AAACAACCCA GGCACCTTTT CGGCCATAGA TAGCGACTCT CCCTGGCTGT TCTCAAATTT TGTCCTCTGA
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Protein sequence | MDFSINPPQR IVFVGLGTIA QSFLPLLSKV HDLSTLEIYA IDPKTPPLIE YFANSFGLKF INSAIDQINY RDILVPILGE GTVLINLSTD VSSLALIELC RSAGALYLDT CIEPWKGGYD DPTIPLHKRT NYHLREQMLS LKKRLGSGVT ALVAHGANPG LVSHFVKRAL LDLAEEILGD CKKPSNKEQW AILSQRLGVK VIHVAEYDSQ ISQKSRERGE FVNTWSVHGF ISESQQPAEL GWGSHERSLP TDASMHTDGC GAAIYIEKPG ASVRVKTWTP FNGPSLGYLV THHEAISIAD FLTLRTADET YRPTVHYAYR PSDEAILSVH EWFGNDCMTP EKTKVLRPGD ILSGSDYLGV LLMGHEKSSY WYGSILSIEK AKELATLNTA TTLQVAAGVL SGYLWILSHP SAGIIEAEDM DHEVALSYIS QYLGELKGVY SDWNPTKNNP GTFSAIDSDS PWLFSNFVL
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