| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_33650 |
|---|
| Symbol | pvdD |
|---|
| ID | 4380461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 2978649 |
|---|
| End bp | 2985995 |
|---|
| Gene Length | 7347 bp |
|---|
| Protein Length | 2448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639325274 |
|---|
| Product | pyoverdine synthetase D |
|---|
| Protein accession | YP_790843 |
|---|
| Protein GI | 116050340 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1020] Non-ribosomal peptide synthetase modules and related proteins |
|---|
| TIGRFAM ID | [TIGR01733] amino acid adenylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.769726 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.0679691 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAAGCAC TCATAGAGAA GGTGGGCTCC CTTTCCCCCC AGGAAAGGAA GGCATTGGCT
GTCCTGCTCA AGCAGCAAGG TGTCAATCTC TTCGAGATCG CGCCAGTGTT CAAGCGTCAG
GACGGCGAGC CCCTGCGGCT CTCCTATGCC CAGGAGCGAC AGTGGTTTCT CTGGCAACTG
GAGCCGGAAA GCGCGGCCTA CCATATCCCG AGTGTCTTGC GTCTACGTGG GCGGCTGGAC
CTGGATGCCC TGCAACGCAG CTTCGACAGC CTGGTTGCGC GGCACGAGAC CCTACGCACC
CGTTTTCGCC TCGACGGCGA CGAGGCGCGC CAGGAGATCG CCGCATCCAT GGCATTGCCG
TTGGATATCG TCGCGTTGGG GCCGCTCGAG GAGGGCGCCC TCGCTCGGCA GGTCGAGACG
ACGATCGCGC GGCCGTTCGA CCTGGAGCGT GGGCCGCTGC TGCGGGTGAG CCTGTTGCGG
CTGGCCGAGG ACGACCATGT GCTGGTGCTG GTCCAGCATC ACATCGTGTC CGACGGTTGG
TCGATGCAGG TGATGGTCGA GGAACTGGTC CAGCTCTATG CCGCCTATAG TCGAGGGCTC
GAGCTAGCGC TGCCGGCTTT GCCGATCCAG TACGCGGACT ACGCCCTGTG GCAGCGCAGC
TGGATGGAGG CAGGGGAAAA GGAGCGCCAG TTGGCGTACT GGACCGGCCT GCTGGGCGGC
GAGCAGCCGG TGCTGGAGTT GCCGTTCGAC CGGCCGCGCC CGGTTCGGCA AAGCCATCGT
GGTGCCCAGT TCATCCTGGA ACTGGATATT GATCTGTCCC AGGCGCTCAG GCGCGTGGCC
CAGCAGGAGG GGGCTACTGC CTTCGCCCTG TTGCTGGCTT CGTTCCAGGC GCTGCTGTAT
CGCTACAGCG GGCAGGCGGA TATCCGTGTC GGTGTGCCGA TCGCCAATCG CAACCGCGTG
GAGACCGAGC GGCTGATCGG CTTCTTCGTC AACACCCAGG TGCTCAAGGC CGACCTGGAC
GGTCGGATGG GCTTCGACGA GCTGCTGGCC CAGGCCCGCC AACGCGCGCT GGAGGCCCAG
GCGCACCAGG ACCTGCCGTT CGAGCAACTG GTGGAGGCCT TGCAGCCGGA GCGCAGTCTT
AGCCACAACC CGCTGTTCCA GGTGCTGTTC AACTACCAGA GCGAAGCCCG TGGCAACGGC
CAGGCATTCC GCTTCGACGA GTTACAGATG GAAAGCGTGC AGTTCGACAG CCGGACGGCG
CAGTTCGACT TGACGTTGGA CCTGACGGAC GAAGAGCAGC GTTTTTGCGC CGTTTTCGAC
TACGCCACCG ACCTGTTCGA CGCCTCCACC GTGGAACGCC TGGCCGGCCA TTGGCGCAAC
CTGTTGCGCG GCATCGTCGC CAACCCACGA CAGCGGCTCG GCGAGTTGCC GCTGCTGGAT
GCGCCGGAGC GCCGGCAGAC CCTCTCCGAA TGGAACCCGG CCCAGCGCGA GTGCGCGGTG
CAGGGCACCT TGCAGCAGCG TTTCGAGGAG CAGGCGCGGC AACGGCCACA GGCGGTTGCG
CTGATCCTCG ACGAACAACG GCTGAGCTAC GGCGAACTGA ATGCGCGGGC CAATCGCCTG
GCGCACTGCC TGATCGCTCG CGGCGTTGGC GCGGACGTGC CGGTCGGGCT GGCGCTGGAG
CGTTCGCTGG ACATGCTGGT CGGCTTGCTG GCGATCCTCA AGGCCGGCGG CGCCTACCTG
CCGTTGGACC CGGCGGCGCC AGAGGAGCGC CTGGCGCATA TCCTCGACGA CAGTGGGGTA
CGGCTGCTGC TGACCCAGGG GCATCTGCTC GAGCGCCTGC CACGGCAGGC GGGGGTGGAG
GTGCTGGCCA TCGACGGTCT GGTGCTGGAT GGCTACGCCG AGAGCGATCC GCTCCCGACG
CTATCGGCGG ACAACCTGGC CTACGTGATC TATACCTCGG GCTCGACCGG CAAGCCCAAG
GGCACATTGC TCACCCACCG CAACGCGCTG CGCCTGTTCA GCGCCACCGA GGCCTGGTTC
GGCTTCGACG AGCGGGACGT GTGGACATTG TTCCATTCCT ACGCCTTCGA TTTCTCGGTC
TGGGAAATCT TCGGCGCGCT GCTCTATGGC GGGCGCCTGG TGATCGTGCC GCAATGGGTG
AGCCGTTCGC CGGAAGACTT CTACCGTCTG CTGTGCCGCG AAGGCGTGAC GGTGCTCAAC
CAGACGCCGT CGGCGTTCAA GCAACTGATG GCGGTGGCCT GTTCCGCCGA CATGGCGACG
CAGCAGCCGG CGCTGCGCTA CGTGATCTTC GGTGGCGAGG CGCTGGATCT GCAGAGCCTG
CGGCCGTGGT TCCAGCGCTT CGGCGATCGC CAGCCGCAAC TGGTGAACAT GTACGGCATC
ACCGAGACCA CGGTGCACGT AACCTACCGT CCGGTGAGCG AGGCCGACCT GGAAGGTGGC
CTGGTCAGTC CGATTGGCGG GACCATCCCG GACCTGTCCT GGTACATCCT CGACCGTGAC
CTGAACCCGG TGCCGCGCGG CGCGGTGGGC GAGCTGTACA TCGGTCGCGC CGGGCTGGCA
CGCGGCTACC TGAGGCGGGC CGGGTTGAGT GCCACCCGCT TCGTGCCGAA CCCGTTCCCC
GGCGGCGCCG GCGAGCGGCT GTACCGTACC GGCGACCTGG CGCGGTTCCA GGCGGATGGC
AATATCGAGT ACATCGGGCG TATCGACCAC CAGGTGAAGG TTCGCGGCTT CCGTATCGAA
CTGGGCGAGA TCGAAGCGGC GCTCGCCGGT CTGGCCGGGG TACGCGATGC CGTGGTGCTG
GCCCATGACG GAGTCGGCGG CACGCAACTG GTGGGATACG TGGTGGCGGA CTCGGCGGAG
GATGCTGAGC GTCTGCGGGA GTCGCTGCGG GAGTCGCTGA AGCGGCACCT GCCGGACTAC
ATGGTGCCGG CGCACCTGAT GCTGCTGGAG CGGATGCCGC TGACGGTCAA TGGCAAGCTC
GACCGGCAGG CGTTGCCGCA ACCGGATGCG AGCCTGTCGC AACAGGCCTA TCGAGCGCCC
GGTAGCGAGC TGGAGCAGCG CATCGCAGCG ATCTGGTCGG AGATCCTGGG AGTGGAACGG
GTCGGCCTGG ACGACAACTT CTTCGAACTG GGCGGTCATT CGTTGCTGGC TACCCGGGTG
ATTTCTCGGG TTCGCCAGGA GCAGCAGTTG GACGCAAGCC TGAAGGCGTT GTTCGAGCGG
CCGGTTCTGG AAGCGTTCGC CCAGGGATTG GAACGCACGA CGGATGCGGT CTCGACGATA
CCGCTTGCCG ATCGGCAGCA ACCGTTGGCA CTGTCCTTCG CTCAGGAGCG TCAGTGGTTC
CTCTGGCAAC TGGAGCCGGA AAGCGCGGCC TACCATATTC CGAGTGCCTT GCGCCTACGC
GGGCGGCTGG ACGTGGATGC CTTGCAACGC AGCTTCGACA GCCTGGTCGC GCGGCATGAA
ACCTTGCGTA CCCGCTTCCG GCTGGAGGGA GGGCGTTCGT ACCAGCAGGT ACAACCTGCG
GTTAGCGTTT CCATCGAGCG GGAACAGTTC GGTGAAGAAG GCCTGATCGA ACGGATACAG
GCCATCGTTG TGCAGCCATT CGACCTGGAA CGGGGGCCGC TGCTGCGGGT GAACCTGTTG
CAACTGGCCG AGGACGACCA TGTACTGGTG CTGGTCCAGC ACCACATCGT GTCCGATGGT
TGGTCGATGC AGGTGATGGT CGAGGAACTG GTCCAGCTCT ATGCCGGCTA CAGCCAAGGG
CTCGACGTGG TGTTGCCGGC CCTGCCGATC CAGTACGCGG ACTACGCCCT GTGGCAGCGC
AGCTGGATGG AGGCGGGGGA AAAGGAGCGC CAGTTGGCGT ACTGGACCGG CCTGCTGGGC
GGCGAGCAGC CGGTGCTGGA GTTGCCGTTC GATCGGCCGC GGCCGGCCCG GCAGAGCCAT
CGTGGCGCGC AGTTGGGTTT CGAGCTATCG CGGGAACTGG TCGAGGCCGT GAGAGCCTTG
GCCCAGCGTG AAGGCGCCAG TAGTTTCATG CTGTTGCTGG CCTCGTTCCA GGCGCTGTTG
TATCGCTACA GCGGGCAGGC GGATATCCGT GTCGGTGTGC CGATCGCCAA TCGCAACCGC
GTGGAGACCG AGCGGCTGAT CGGCTTCTTC GTCAACACCC AGGTGCTCAA GGCCGACCTG
GACGGTCGGA TGGGCTTCGA CGAGCTGCTG GCACAGGCCC GCCAACGCGC GCTGGAGGCC
CAGGCGCACC AGGACCTGCC GTTCGAGCAA CTGGTGGAAG CCTTGCAGCC GGAGCGCAAT
GCCAGCCATA ACCCACTGTT CCAGGTGCTG TTCAACCATC AGAGCGAGAT ACGCTCGGTG
ACGCCCGAGG TTCAGTTGGA GGACCTGCGT CTGGAAGGCC TGGCCTGGGA CGGCCAGACT
GCGCAGTTCG ACCTGACGCT GGATATTCAG GAAGACGAAA ACGGCATCTG GGCCTCCTTC
GACTATGCCA CCGATCTGTT CGACGCCTCC ACCGTGGAAC GCTTGGCCGG CCATTGGCGC
AACCTGTTGC GCGGCATCGT CGCCAACCCA CGACAGCGGC TCGGCGAGTT GCCGCTGCTG
GATGCGCCGG AGCGCCGGCA GACCCTCTCC GAATGGAACC CGGCCCAGCG CGAGTGCGCG
GTGCAGGGCA CCTTGCAGCA GCGTTTCGAG GAGCAGGTGC GGCAATGGCC ACAGGCGGTT
GCGCTGATCC TCGACGAACA ACGGCTGAGC TACGGCGAAC TGAATGCGCG GGCCAATCGC
CTGGCGCACT GCCTGATCGC TCGCGGCGTT GGCGCGGACG TGCCGGTCGG GCTGGCGCTG
GAGCGTTCGC TGGACATGCT GGTCGGCTTG CTGGCGATCC TCAAGGCCGG CGGCGCCTAC
CTGCCGTTGG ACCCGGCGGC GCCAGAGGAG CGCCTGGCGC ATATCCTCGA CGACAGTGGG
GTACGGCTGC TGCTGACCCA GGGGCATCTG CTCGAGCGCC TGCCACGGCA GGCGGGGGTG
GAGGTGCTGG CCATCGACGG ACTGGTGCTG GACGGCTACG CCGAGAGCGA TCCGCTCCCG
ACGCTATCGG CGGACAACCT GGCCTACGTG ATCTATACCT CGGGCTCGAC CGGCAAGCCC
AAGGGCACAT TGCTCACCCA CCGCAACGCG CTGCGCCTGT TCAGCGCCAC CGAGGCCTGG
TTCGGCTTCG ACGAGCGGGA CGTGTGGACG TTGTTCCATT CCTACGCCTT CGATTTCTCG
GTCTGGGAAA TCTTCGGCGC GCTGCTCTAT GGCGGGCGCC TGGTGATCGT GCCGCAATGG
GTGAGCCGTT CGCCGGAAGA CTTCTACCGT CTGCTGTGCC GCGAAGGCGT GACGGTGCTC
AACCAGACGC CGTCGGCGTT CAAGCAACTG ATGGCGGTGG CCTGTTCCGC CGACATGGCG
ACGCAGCAGC CGGCGCTGCG CTACGTGATC TTCGGTGGCG AGGCGCTGGA TCTTCAGAGC
CTGCGGCCGT GGTTCCAGCG CTTCGGCGAT CGCCAGCCGC AACTGGTGAA CATGTACGGC
ATCACCGAGA CCACGGTGCA CGTAACCTAC CGTCCGGTGA GCGAAGCCGA CCTGGAGGGT
GGCCTGGTCA GTCCGATTGG CGGGACCATC CCGGACCTGT CCTGGTACAT CCTCGACCGT
GACCTGAACC CGGTGCCGCG CGGCGCGGTG GGCGAGCTGT ACATCGGTCG CGCCGGGCTG
GCGCGCGGCT ACCTGAGGCG GCCCGGGTTG AGTGCCACCC GCTTCGTGCC GAACCCGTTC
CCCGGCGGCG CCGGCGAGCG GCTGTACCGT ACCGGCGACC TGGCACGGTT CCAGGCGGAT
GGCAATATCG AGTACATCGG GCGTATCGAC CACCAGGTGA AGGTTCGCGG CTTCCGTATC
GAACTGGGCG AGATCGAAGC GGCGCTCGCC GGTCTGGCCG GGGTACGCGA TGCCGTGGTG
CTGGCCCATG ACGGAGTCGG CGGCACGCAA CTGGCGGGAT ACGTGGTGGC GGACTCGGCG
GAGGATGCTG AGCGTCTGCG GGAGTCGCTG CGGGAGTCGC TGAAGCGGCA CCTGCCGGAC
TACATGGTGC CGGCGCACCT GATGCTGCTG GAGCGGATGC CGCTGACGGT CAATGGCAAG
CTCGACCGGC AGGCGTTGCC GCAACCGGAT GCGAGCTTGT CGCAGCAGGC CTATCGAGCG
CCCGGTAGCG AGCTGGAGCA GCGCATCGCA GCGATCTGGG CGGAGATCCT GGGAGTGGAA
CGGGTCGGCC TGGACGACAA CTTCTTCGAA CTGGGCGGTC ACTCATTGTT GCTGCTGATG
CTCAAGGAGC GGATCGGCGA TACCTGCCAG GCTACGCTGA GCATCAGCCA ACTGATGACC
CATGCCAGCG TCGCGGAACA GGCGGCATGC ATCGAGGGGC AGGCGCGTGA GTCGTTGCTG
GTGCCGCTCA ACGGCAGGCG CGAAGGTTCG CCGCTGTTCA TGTTCCATCC GAGTTTCGGC
TCTGTGCACT GTTACAAGAC CCTCGCCATG GCGCTGCGGG ATCGTCATCC GGTCAAGGGT
GTTGTCTGCC GTGCCCTGCT GGGCGCTGGT CGCGAGGTGC CGGAGTGGGA CGATATGGTT
GCGGAATACG CCGAGCAATT GCTGCAGGAG CACCCCAAAG GGGTTTTCAA CCTGGCGGGA
TGGTCGCTCG GCGGCAACCT GGCGATGGAT GTCGCGGCCC GGCTGGAGCA GCGTGGGCGG
CAGGTGGCTT TCGTCGGCTG GATCGATGCG CCGGCACCGG TCAGGGTCGA AGCGTTCTGG
AACGAGATCG GGCCGACGCC GGAGGCAGTC CCGAACCTAT CCGTGGGCGA GATGCGGGTG
GAACTGCTCG GTGTCATGTT TCCGGAGCGG GCCGAGCATA TCGAACGGGC CTGGTCATCG
ATCTGCTCCG CCACGACGGA CGATGAGCAG CGCTGGACGA GGATGAGCGA CTGGGCGGAA
GCGGAGATCG GCGCCGAGTT CGCGACACTG CGCAGCGAAA TCGTACAGAG CAACGAACTG
GAAGTGTCCT GGGAGTTGAA ACAGATCCTC GACGAGCGCC TGAAAGCGAT GGATTACCCG
CGTCTGACGG CGAAGGTCAG CCTCTGGTGG GCCGCGCGCA GCACCAATGC CATCCAGCGG
AGCGCGGTGG AGCGCTCGAT GGCCGAGGCG ATCGGGGCTG AGCGTGTCGA ACCGGTGCGG
GTGCTGGATA CCCGGCACGA CAAGATCATC GACCACCCTG AGTTTGTGCA GAGCTTCCGG
GCCGCCCTGG AGTATGCCGG GCGCTGA
|
|---|
| Protein sequence | MQALIEKVGS LSPQERKALA VLLKQQGVNL FEIAPVFKRQ DGEPLRLSYA QERQWFLWQL
EPESAAYHIP SVLRLRGRLD LDALQRSFDS LVARHETLRT RFRLDGDEAR QEIAASMALP
LDIVALGPLE EGALARQVET TIARPFDLER GPLLRVSLLR LAEDDHVLVL VQHHIVSDGW
SMQVMVEELV QLYAAYSRGL ELALPALPIQ YADYALWQRS WMEAGEKERQ LAYWTGLLGG
EQPVLELPFD RPRPVRQSHR GAQFILELDI DLSQALRRVA QQEGATAFAL LLASFQALLY
RYSGQADIRV GVPIANRNRV ETERLIGFFV NTQVLKADLD GRMGFDELLA QARQRALEAQ
AHQDLPFEQL VEALQPERSL SHNPLFQVLF NYQSEARGNG QAFRFDELQM ESVQFDSRTA
QFDLTLDLTD EEQRFCAVFD YATDLFDAST VERLAGHWRN LLRGIVANPR QRLGELPLLD
APERRQTLSE WNPAQRECAV QGTLQQRFEE QARQRPQAVA LILDEQRLSY GELNARANRL
AHCLIARGVG ADVPVGLALE RSLDMLVGLL AILKAGGAYL PLDPAAPEER LAHILDDSGV
RLLLTQGHLL ERLPRQAGVE VLAIDGLVLD GYAESDPLPT LSADNLAYVI YTSGSTGKPK
GTLLTHRNAL RLFSATEAWF GFDERDVWTL FHSYAFDFSV WEIFGALLYG GRLVIVPQWV
SRSPEDFYRL LCREGVTVLN QTPSAFKQLM AVACSADMAT QQPALRYVIF GGEALDLQSL
RPWFQRFGDR QPQLVNMYGI TETTVHVTYR PVSEADLEGG LVSPIGGTIP DLSWYILDRD
LNPVPRGAVG ELYIGRAGLA RGYLRRAGLS ATRFVPNPFP GGAGERLYRT GDLARFQADG
NIEYIGRIDH QVKVRGFRIE LGEIEAALAG LAGVRDAVVL AHDGVGGTQL VGYVVADSAE
DAERLRESLR ESLKRHLPDY MVPAHLMLLE RMPLTVNGKL DRQALPQPDA SLSQQAYRAP
GSELEQRIAA IWSEILGVER VGLDDNFFEL GGHSLLATRV ISRVRQEQQL DASLKALFER
PVLEAFAQGL ERTTDAVSTI PLADRQQPLA LSFAQERQWF LWQLEPESAA YHIPSALRLR
GRLDVDALQR SFDSLVARHE TLRTRFRLEG GRSYQQVQPA VSVSIEREQF GEEGLIERIQ
AIVVQPFDLE RGPLLRVNLL QLAEDDHVLV LVQHHIVSDG WSMQVMVEEL VQLYAGYSQG
LDVVLPALPI QYADYALWQR SWMEAGEKER QLAYWTGLLG GEQPVLELPF DRPRPARQSH
RGAQLGFELS RELVEAVRAL AQREGASSFM LLLASFQALL YRYSGQADIR VGVPIANRNR
VETERLIGFF VNTQVLKADL DGRMGFDELL AQARQRALEA QAHQDLPFEQ LVEALQPERN
ASHNPLFQVL FNHQSEIRSV TPEVQLEDLR LEGLAWDGQT AQFDLTLDIQ EDENGIWASF
DYATDLFDAS TVERLAGHWR NLLRGIVANP RQRLGELPLL DAPERRQTLS EWNPAQRECA
VQGTLQQRFE EQVRQWPQAV ALILDEQRLS YGELNARANR LAHCLIARGV GADVPVGLAL
ERSLDMLVGL LAILKAGGAY LPLDPAAPEE RLAHILDDSG VRLLLTQGHL LERLPRQAGV
EVLAIDGLVL DGYAESDPLP TLSADNLAYV IYTSGSTGKP KGTLLTHRNA LRLFSATEAW
FGFDERDVWT LFHSYAFDFS VWEIFGALLY GGRLVIVPQW VSRSPEDFYR LLCREGVTVL
NQTPSAFKQL MAVACSADMA TQQPALRYVI FGGEALDLQS LRPWFQRFGD RQPQLVNMYG
ITETTVHVTY RPVSEADLEG GLVSPIGGTI PDLSWYILDR DLNPVPRGAV GELYIGRAGL
ARGYLRRPGL SATRFVPNPF PGGAGERLYR TGDLARFQAD GNIEYIGRID HQVKVRGFRI
ELGEIEAALA GLAGVRDAVV LAHDGVGGTQ LAGYVVADSA EDAERLRESL RESLKRHLPD
YMVPAHLMLL ERMPLTVNGK LDRQALPQPD ASLSQQAYRA PGSELEQRIA AIWAEILGVE
RVGLDDNFFE LGGHSLLLLM LKERIGDTCQ ATLSISQLMT HASVAEQAAC IEGQARESLL
VPLNGRREGS PLFMFHPSFG SVHCYKTLAM ALRDRHPVKG VVCRALLGAG REVPEWDDMV
AEYAEQLLQE HPKGVFNLAG WSLGGNLAMD VAARLEQRGR QVAFVGWIDA PAPVRVEAFW
NEIGPTPEAV PNLSVGEMRV ELLGVMFPER AEHIERAWSS ICSATTDDEQ RWTRMSDWAE
AEIGAEFATL RSEIVQSNEL EVSWELKQIL DERLKAMDYP RLTAKVSLWW AARSTNAIQR
SAVERSMAEA IGAERVEPVR VLDTRHDKII DHPEFVQSFR AALEYAGR
|
|---|
| |