Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_30200 |
Symbol | cspD |
ID | 4380653 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 2616438 |
End bp | 2616710 |
Gene Length | 273 bp |
Protein Length | 90 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 639325000 |
Product | cold-shock protein CspD |
Protein accession | YP_790572 |
Protein GI | 116050609 |
COG category | [K] Transcription |
COG ID | [COG1278] Cold shock proteins |
TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
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Plasmid Coverage information |
Num covering plasmid clones | 100 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 62 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAGCG GTAAGGTCAA GTGGTTCAAC AACGCCAAGG GCTACGGGTT CATCCTGGCC GAGGGCCGAG ATGAGGACCT GTTCGCCCAT TACTCGGCCA TTCAGATGGA CGGTTACAAG ACACTCAAGG CGGGCCAGCC GGTCAATTTC GAGATCATCC AGGGACCGAA GGGACTGCAT GCCATCAACA TCAGCCCCGC CACCGCGACA ACCGCCGCAC CCTCCGCCCC CGCCCCGCAG GAAGAGCCGC AGGCGACGCC CATCGAAGCC TGA
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Protein sequence | MLSGKVKWFN NAKGYGFILA EGRDEDLFAH YSAIQMDGYK TLKAGQPVNF EIIQGPKGLH AINISPATAT TAAPSAPAPQ EEPQATPIEA
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