| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_25560 |
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| Symbol | rne |
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| ID | 4381002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 2233274 |
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| End bp | 2236447 |
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| Gene Length | 3174 bp |
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| Protein Length | 1057 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639324619 |
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| Product | ribonuclease E |
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| Protein accession | YP_790197 |
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| Protein GI | 116050978 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0583784 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGAA TGCTGATCAA CGCGACTCAA CCCGAGGAGT TGCGTGTTGC ACTGGTCGAC
GGCCAACGCC TGTTCGACCT CGACATCGAG TCGGGCGCCC GCGAGCAGAA GAAGGCCAAC
ATCTACAAAG GCCGCATCAC TCGCGTCGAA CCCAGCCTCG AAGCCGCCTT CGTCGACTTC
GGCGCCGAAC GCCACGGCTT CCTCCCCCTC AAAGAAATCT CCCGCGAATA CTTCAAGAAA
TCCCCCGAAG GCCGGATCAA CATCAAGGAA GTCCTGAGCG AAGGCCAGGA AGTCATCGTC
CAGGTCGAGA AGGAAGAGCG CGGCAACAAG GGCGCCGCCC TGACCACCTT CATCAGCCTG
GCCGGCCGTT ACCTGGTGCT GATGCCGAAC AACCCGCGCG CCGGCGGCAT CTCCCGTCGT
ATCGAAGGCG AAGAACGCAA CGAGCTGCGC GAGGCCCTGA ACGGCCTCAA CGCACCGGCC
GACATGGGCC TGATCGTGCG CACCGCCGGC CTCGGCCGCA GCACCGAGGA ACTGCAGTGG
GACCTCGACT ACCTGCTGCA ACTGTGGAGC GCGATCAAGG AAGCGTCCGG CGAACGTGGC
GCGCCCTTCC TGATCTACCA GGAAAGCAAC GTCATCATCC GCGCCATCCG CGACTACCTG
CGCCAGGACA TCGGCGAAGT GCTGATCGAC AGCATCGACG CCCAGGAAGA AGCCCTGAAC
TTCATCCGCC AGGTGATGCC GCAGTACGCC AGCAAGGTGA AGCTGTACCA GGACAGCGTT
CCGCTGTTCA ATCGCTTCCA GATCGAGAGC CAGATCGAGA CCGCTTTCCA GCGCGAAGTG
AAGCTGCCGT CCGGCGGCTC CATCGTCATC GACCCGACCG AGGCCCTGGT TTCCATCGAC
ATCAACTCGG CGCGCGCCAC CAAGGGCGGC GACATCGAGG AAACCGCCCT GCAGACCAAC
CTGGAAGCGG CCGAGGAAAT CGCCCGCCAG CTGCGCCTGC GTGACATCGG TGGCCTGATC
GTCATCGACT TCATCGACAT GACCCCGGCG AAGAACCAGC GCGCCGTGGA AGAGCGTGTC
CGCGAAGCCC TCGAGGCCGA TCGCGCGCGC GTCCAGGTCG GTCGCATCTC GCGCTTCGGC
CTGCTGGAAA TGTCCCGCCA GCGCCTGCGT CCGTCCCTCG GCGAGACCAG CGGCATCGTC
TGCCCGCGCT GCAACGGCCA GGGCATCATC CGCGACGTCG AGTCGCTGTC GCTGGCCATC
CTGCGCCTGA TCGAGGAAGA AGCCCTGAAG GACCGCACCG CGGAAGTCCG CGCCCGCGTG
CCCTTCCAGG TCGCCGCCTT CCTGCTCAAC GAGAAGCGCA ACGCCATCAC CAAGATCGAA
CTGCGCACCC GCGCGCGCAT CTTCATCCTG CCGGACGATC ATCTGGAAAC CCCGCATTTC
GAAGTCCAGC GTCTGCGCGA TGACAGCCCC GAACTGGTTG CCGGCCAGAC CAGCTACGAA
ATGGCCACCG TCGAGCACGA AGAAGCCCAG CCGGTCAGCT CGACCCGCAC CCTGGTCCGC
CAGGAAGCAG CAGTCAAGAC CGTCGCTCCC CAGCAGCCCG CACCGCAACA CACCGAAGCA
CCGGTCGAGC CGGCCAAGCC GATGCCCGAG CCGAGCCTGT TCCAGGGCCT GGTGAAGTCC
CTGGTCGGCC TGTTCGCAGG CAAGGATCAA CCTGCCGCCA AGCCTGCTGA AACCAGCAAG
CCGGCTGCCG AGCGCCAAAC CCGCCAGGAC GAGCGTCGCA ACGGCCGCCA GCAGAACCGC
CGCCGCGATG GCCGCGATGG CAATCGCCGC GACGAAGAGC GCAAGCCCCG CGAGGAACGC
GCAGAGCGCC AACCGCGCGA AGAGCGCGCC GAACGCCCGA ACCGCGAAGA GCGCAGCGAA
CGCCGCCGCG AAGAGCGCGC CGAGCGCCCG GCTCGCGAGG AGCGCCAGCC GCGCGAAGGC
CGTGAAGAGC GCGCCGAGCG GACGCCCCGC GAAGAACGCC AGCCGCGCGA AGGCCGCGAA
GGTCGCGAGG AACGCAGCGA ACGCCGCCGC GAAGAGCGCG CCGAACGCCC GGCTCGCGAA
GAGCGCCAAC CCCGCGAAGG CCGTGAAGAA CGCGCCGAGC GCCCGGCCCG CGAAGAGCGC
CAGCCGCGCG AGGATCGCCA GGCTCGCGAC GCCGCGGCCC TGGAAGCCGA GGCGCTGCCG
AACGACGAGA GCCTGGAGCA GGACGAGCAG GACGATACCG ATGGCGAGCG CCCGCGCCGC
CGCTCCCGCG GCCAGCGTCG TCGCAGCAAC CGCCGCGAAC GCCAGCGCGA GGTCAGCGGC
GAGCTGGAAG GCAGCGAGGC GACCGATAAC GCCGCCGCGC CGCTGAACAC CGTCGCAGCC
GCCGCTGCTG CCGGTATCGC TGTCGCCAGC GAAGCCGTAG AAGCAAACGT GGAGCAAGCC
CCGGCCACTA CCAGCGAGGC TGCCAGCGAA ACCACGGCAA GCGATGAAAC CGACGCGCCG
ACCAGCGAAG CCGTGGAAAC CCAGGGCGCG GACAGCGAGG CCAATGCCGG CGAAACCGCC
GACATCGAAG CGCCGGTGAC CGTCAGCGTG GTCCGGGACG AAGCCGACCA GAGCACCCTG
CTGGTCGCGC AAGTCACTGA AGAAGCTCCC TTCGCCAGCG AAAGCGTGGA AAGCCGCGAA
GACGCCGAGA GCGCCGTGCA ACCGGCAACG GAAGCGGCCG AAGAAGTTGC CGCCCCGGCG
CCCGTCGAGG TAGCAGCCCC TAGCGAGCCC GCAGCCACCG AGGAGCCGAC CCCGGCCATC
GCGGCGGTGC CGGCCAACGC GACTGGCCGT GCCCTCAACG ACCCACGGGA AAAACGTCGC
CTGCAACGCG AAGCCGAGCG TCTGGCACGC GAAGCCGCAG CAGCAGCCGA AGCGGCAGCT
CAGGCCGCTC CCGCCGTCGA GGAGACCCCA GCTGTAGCGA GCGAGGAAGC GTCGGCCCAG
GAGGAACCTG CTGCACCCCA GGCTGAAGAA ATCGCCCAGG CCGACGTTCC GTCTCAGGCG
GACGAAGCCC AGGAAGCGGT ACAGGCCGAG CCTGAAGCTT CCGGCGAAGA CGCCGCCGAC
ACAGAGCACG CGAAAAAGAC CGAGGAAAGC GAAACCTCGC GCCCGCATGC CTGA
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| Protein sequence | MKRMLINATQ PEELRVALVD GQRLFDLDIE SGAREQKKAN IYKGRITRVE PSLEAAFVDF
GAERHGFLPL KEISREYFKK SPEGRINIKE VLSEGQEVIV QVEKEERGNK GAALTTFISL
AGRYLVLMPN NPRAGGISRR IEGEERNELR EALNGLNAPA DMGLIVRTAG LGRSTEELQW
DLDYLLQLWS AIKEASGERG APFLIYQESN VIIRAIRDYL RQDIGEVLID SIDAQEEALN
FIRQVMPQYA SKVKLYQDSV PLFNRFQIES QIETAFQREV KLPSGGSIVI DPTEALVSID
INSARATKGG DIEETALQTN LEAAEEIARQ LRLRDIGGLI VIDFIDMTPA KNQRAVEERV
REALEADRAR VQVGRISRFG LLEMSRQRLR PSLGETSGIV CPRCNGQGII RDVESLSLAI
LRLIEEEALK DRTAEVRARV PFQVAAFLLN EKRNAITKIE LRTRARIFIL PDDHLETPHF
EVQRLRDDSP ELVAGQTSYE MATVEHEEAQ PVSSTRTLVR QEAAVKTVAP QQPAPQHTEA
PVEPAKPMPE PSLFQGLVKS LVGLFAGKDQ PAAKPAETSK PAAERQTRQD ERRNGRQQNR
RRDGRDGNRR DEERKPREER AERQPREERA ERPNREERSE RRREERAERP AREERQPREG
REERAERTPR EERQPREGRE GREERSERRR EERAERPARE ERQPREGREE RAERPAREER
QPREDRQARD AAALEAEALP NDESLEQDEQ DDTDGERPRR RSRGQRRRSN RRERQREVSG
ELEGSEATDN AAAPLNTVAA AAAAGIAVAS EAVEANVEQA PATTSEAASE TTASDETDAP
TSEAVETQGA DSEANAGETA DIEAPVTVSV VRDEADQSTL LVAQVTEEAP FASESVESRE
DAESAVQPAT EAAEEVAAPA PVEVAAPSEP AATEEPTPAI AAVPANATGR ALNDPREKRR
LQREAERLAR EAAAAAEAAA QAAPAVEETP AVASEEASAQ EEPAAPQAEE IAQADVPSQA
DEAQEAVQAE PEASGEDAAD TEHAKKTEES ETSRPHA
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