| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_20030 |
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| Symbol | hasD |
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| ID | 4381371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | + |
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| Start bp | 1725533 |
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| End bp | 1727323 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 639324154 |
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| Product | transport protein HasD |
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| Protein accession | YP_789742 |
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| Protein GI | 116051425 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.863087 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTCC GGCCGGCCTC GCCGCGCAAT GAAATCCTCG CCACCCTCGG CCGTTTCCGC
CCGGCGCTGC GCAGCGTCGC GCTGTTCACC GCGGTGATCA ACCTGCTGAT GCTGGCGCCG
TCGCTGTACA TGCTGCAGGT CTACGACCGG GTGCTCGGCT CCGGCAACCA CATGACCCTG
CTGATGCTGA CCCTCATGGT GCTCGGCCTC TACCTGCTGC TCGGCGCCCT GGAGTGGGTG
CGCAGCCTGG TGGTGATCCG CCTCGGCGGC CAGCTCGACA TGCAACTCAA CCAGCGCATC
TACGACGCCT CGTTCCGCGC CAGCCTGGAG CGCGGCGAGC AGGCCGCCGG GCAGGCGCTG
AACGACCTGA CCAGCCTGCG CCAGTTCCTC ACCGGCAACG CCCTGTTCGC CTTCTTCGAC
GCGCCCTGGT TCCCGCTCTA CCTGCTGGTG ATCTTCCTCT TCAGTCCCTG GCTCGGCCTG
CTCGCCCTGG CCGGGGCACT GCTACTGGTG CTGCTCGCCT GGGTCAACGA AAGCCGCTCG
CGCGAACCGC TGGCCGAGGC CGGGCAACTG TCGATCCTCG CCACCCAGCA GGCCTCGGCC
AACCTGCGCC AGGCGGAAAC CCTGGCGGCA ATGGGCATGT TGCCGGCCAT GCGCGCGCGC
TGGTTCGCCC AGCACCAGGC CTTCCTTGCC CGGCAGAACC TCGGCAGCGA GCGCAGCGCG
GCGATCGGCG CGACCTCCAA GGGCGTGCGC CTGGCCTTGC AGTCGCTGGT GCTCGGCCTC
GGCGCCTGGC TGGCGGTGGA AGGCCTGATC ACCCCGGGGA TGATGATCGC CGGCTCGATC
CTGATGGGCC GCGTGCTCAG CCCCATCGAC CAGTTGATCG CGGTCTGGCG CCAGTGGAGC
GGCGCGCGGC AGGCCTACCA GCGACTGGCG CGGCTGCTCG AGGAGAATCC GCCTGCCGCC
CTGGGCATGC CGCTGCCGGT GCCGCGCGGC GCGTTGCGCG TCGAGCGGCT CTGCGCGGCC
GCGCCGGGAC GCGAGCAGGC ATTGTTGCAG GACCTCGGTT TCGCCCTGGA GCCTGGCGAA
GCGCTCGGCG TGATCGGGCC GTCCGGTTCC GGCAAGTCGA CCCTGGCGCG CTTGCTGGTG
GGCGCCTGGC AGCCGCTGTC CGGCGCGGTG CGCCTGGACG GCGCCGACCT GCGGCAGTGG
AGTGCGGCGG CACTGGGGCC GCACATCGGC TACCTGGCCC AGGACGTGCA ACTGTTCGCC
GGCAGCATCG CCGAGAACAT CGCGCGCTTC GCCGAGGTGG ATGCCGAGAA GGTGGTGGCG
GCGGCGCGCC TGGCCGGCGT GCACGACCTG GTGCTGCGCC TGCCGCAGGG CTACGACACG
CGCCTTGGCG ACGGCGGCGC CGGACTCTCC GGCGGCCAGC GCCAGCGCAT CGGCCTGGCC
CGCGCGCTGT ACGGCCGACC GGCGCTGATC GTGCTCGACG AACCCAATGC CAGCCTCGAC
GAGGCGGGTG AGGCGGCCCT GGCCGAGGCC ATCGCGGCGA TGCGCCGGCA CGGCAGCAGC
CTGGTGCTGG TCACCCACAA GCCGGCGGTG CTGGCGCTGA CCGACAAGCT GTTGTTGCTG
CATGGCGGGC GCCTGCAGCG TTTCGGCGCG ACCGCCGAGG TGCTTGCCAG CGCCTCGCCG
CCGGCCGCTG CGGCCCCGGC GCCGACACGG CCGACGCCGG CGTTCGGTTT CGGCTACCGG
CCGGGACCGG GGATGCCGGT CGGCGGTGTG CCGGGAGGAG CGGCGCGATG A
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| Protein sequence | MKLRPASPRN EILATLGRFR PALRSVALFT AVINLLMLAP SLYMLQVYDR VLGSGNHMTL
LMLTLMVLGL YLLLGALEWV RSLVVIRLGG QLDMQLNQRI YDASFRASLE RGEQAAGQAL
NDLTSLRQFL TGNALFAFFD APWFPLYLLV IFLFSPWLGL LALAGALLLV LLAWVNESRS
REPLAEAGQL SILATQQASA NLRQAETLAA MGMLPAMRAR WFAQHQAFLA RQNLGSERSA
AIGATSKGVR LALQSLVLGL GAWLAVEGLI TPGMMIAGSI LMGRVLSPID QLIAVWRQWS
GARQAYQRLA RLLEENPPAA LGMPLPVPRG ALRVERLCAA APGREQALLQ DLGFALEPGE
ALGVIGPSGS GKSTLARLLV GAWQPLSGAV RLDGADLRQW SAAALGPHIG YLAQDVQLFA
GSIAENIARF AEVDAEKVVA AARLAGVHDL VLRLPQGYDT RLGDGGAGLS GGQRQRIGLA
RALYGRPALI VLDEPNASLD EAGEAALAEA IAAMRRHGSS LVLVTHKPAV LALTDKLLLL
HGGRLQRFGA TAEVLASASP PAAAAPAPTR PTPAFGFGYR PGPGMPVGGV PGGAAR
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