Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_16410 |
Symbol | |
ID | 4384658 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | + |
Start bp | 1403759 |
End bp | 1405378 |
Gene Length | 1620 bp |
Protein Length | 539 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639323867 |
Product | putative MFS transporter |
Protein accession | YP_789455 |
Protein GI | 116051706 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 62 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCGAGT ACGCAACGAC CCCTTCCTAC ACAGTGCCTG CGACCACGCC CCAGGAGGAG CGCAAGGTGA TCTTCGCCTC CTCGCTGGGC ACGGTCTTCG AGTGGTACGA CTTCTTCCTC TACGGCGCCC TGGCGGCGGT GATCAGCAAG CAGTTCTTCG CCGGCGTCAA CGACACCACC GCCTTCATCT TCGCCCTGAT GGCCTTCGCC GCCGGCTTCC TGGTGCGGCC CTTCGGCGCG CTGGTGTTCG GCCGCCTGGG CGACATGATC GGGCGCAAGT ACACCTTCCT GGTGACCATC CTGCTGATGG GGCTGTCGAC CTTCGCCGTC GGCCTGCTGC CCACCTATGC CTCGATCGGT GTCGCCGCGC CGATCATCCT GGTCACCTTG CGCATGCTCC AGGGCCTGGC CCTGGGCGGC GAGTACGGCG GCGCGGCGAT CTACGTCGCC GAGCACGCCC CGGCGAACAA GCGCGGTAGC TACACCAGTT GGATCCAGTC CACCGCGACC CTCGGCCTGT TGCTCTCGCT GCTGGTGATC CTGGCTTGCC GCCAGTTGAC CGGCGACGAG TTCGAGACCT GGGGCTGGCG CCTGCCATTC CTGCTGTCCA TCGTCCTGCT GGGCATTTCC ACCTGGATCC GCCTGTCCAT GCGCGAGTCG CCGGCGTTCC TCAAGATGAA GGCGGAGGGC AAGGTCAGCA AGGCGCCGCT GCGCGAGTCC TTCACCCAGT GGGGCAACCT CAAGGTGGTG CTGACCGCGC TGTTCAGCAT CAATGCCGGC CAGGCGGTGA CCTTCTACAC GGCGCAGTTC TACGTGCTGT TCTTCCTCAC CCAGGTGCTC AAGGTCGATG GCGGCACCGC CAACGGTCTG CTGATCGTCG CCCTGGTGCT TGGCGCGCCG TTCTTCATCG TCGCCGGCTG GCTGTCCGAC CGCATCGGCC GCAAGCCGGT GCTGCTGGCC GGCCTGCTGC TCGCCACGCT GTTCTACTTC CCGCTGTTCA AGGGCTTGAC CCACTACGCC AATCCGGCCA TCGACCAGGC CAGCCGGCAG TCGCCGATCA GCGTGGTGGC CGACCCGGCG ACCTGCACCT TCCAGTTCGA CCCGGTGGGC AAGGCGACCT TCGACAGCCC CTGCGACAAG GTCAAGACCT TCCTGGTCAA GGCCGGCCTG CCCTACTCGA CGGTGGCGGC GCCCGCCGGC AGCGACGTCA GGATACGGGT CGGCGAAACC GAGATCGCCG GCTTCGACGC CGAAGCGATG GCGGCCGCGG TGAAGGCGGC AGGCTACCCG CAGCAGGCCG ACGGTAGCCA GGTGAACAAG CCGATGGTGA TCGCCATCAT CTTCGCCCTG GTACTGATCT CCACCCTCTG CTACGGCCCG CTGGCGGCGC TGATGGTCGA ACTGTTCCCG ACCCGCATCC GCTATTCCTC GCTGTCCCTG CCGTACCACA TCGGCAACGG CTGGTTCGGC GGCTTCCTGC CCACGGTCTC GTTCGCCCTG GTGGTGTACA CCGGCGACAT CTTCTACGGC CTCTGGTATC CGGTGCTGAT CACCGGCGGC AGCCTGGTCT GCGCCTTGCT GTTCCTCCGC GAAACCCGCC ATACCGATAT CCACCGGTGA
|
Protein sequence | MTEYATTPSY TVPATTPQEE RKVIFASSLG TVFEWYDFFL YGALAAVISK QFFAGVNDTT AFIFALMAFA AGFLVRPFGA LVFGRLGDMI GRKYTFLVTI LLMGLSTFAV GLLPTYASIG VAAPIILVTL RMLQGLALGG EYGGAAIYVA EHAPANKRGS YTSWIQSTAT LGLLLSLLVI LACRQLTGDE FETWGWRLPF LLSIVLLGIS TWIRLSMRES PAFLKMKAEG KVSKAPLRES FTQWGNLKVV LTALFSINAG QAVTFYTAQF YVLFFLTQVL KVDGGTANGL LIVALVLGAP FFIVAGWLSD RIGRKPVLLA GLLLATLFYF PLFKGLTHYA NPAIDQASRQ SPISVVADPA TCTFQFDPVG KATFDSPCDK VKTFLVKAGL PYSTVAAPAG SDVRIRVGET EIAGFDAEAM AAAVKAAGYP QQADGSQVNK PMVIAIIFAL VLISTLCYGP LAALMVELFP TRIRYSSLSL PYHIGNGWFG GFLPTVSFAL VVYTGDIFYG LWYPVLITGG SLVCALLFLR ETRHTDIHR
|
| |