Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_14630 |
Symbol | secD |
ID | 4381891 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | + |
Start bp | 1247545 |
End bp | 1249407 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639323723 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_789311 |
Protein GI | 116051846 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 73 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAACA AGTATCCTCT GTGGAAATAT CTGCTGATCC TGGCGGTCCT CGCCGTCGGG TTCATCTATT CCGCACCCAA CCTCTACCCG GACGACCCGG CGGTGCAGAT CAGCGGCGCC AGCACGGCGC TGCAGGTCAC CCAGGCCGAC GTCGACCGCG CTGCCAAGGC GCTGACCGAC GCCGGTATCG CGGTGAAGGC CAACAGCCTG TCGAAGAAGG GCGGCCTGAT CCGCCTGGTC AAGCAGGACG ACCAGCTTCC CGCCAAGGAA GTGGTGCGCC GGACCCTGGG CGACGACTAC GTGGTGGCGC TGAACCTGGC CCAGACCACT CCCGAGTGGC TGCGCAAGCT GGGCGGCAGC CCAATGAAGC TCGGCCTGGA CCTGTCCGGC GGCGTGCACT TCCTGCTGGA AGTGGACATG GACAAGGCGG TCGATGCCCG CCTGAAGGTC TATGAAAGCG AAGTGAAGAG CCTGCTGCGC AAGGAGCGCG TGCGCTACCG CAGCCTGCCG ATCCAGGATC GCGCGATCCA GCTCGGCTTC ACCGACAGCG AATCCCTGGA CAAGGCGCGC AGCCTGATCG CCAAGGACTT CCGCGATTTC GAGGTCGTGC CCGAAGAGCG CAACGGCCTG CAGGTCCTGC GTGTCGCCCT GACCCAGGCC AAACTGGCGG AAATCCGCGA GTACTCCATC AAGCAGAACC TCACCACCGT CCGCAACCGG GTCAACGAGC TGGGCGTATC CGAGCCGCTG GTGCAGCGCC AGGGCGCCAA TCGCATCGTG GTCGAGCTGC CGGGCGTGCA GGACACCGCG GAAGCCAAGC GAATCCTCGG CAAGACCGCC AACCTCGAAT TCCGCCTGGC CGCCGAGCCG GACGCCCTGA AGTCCGCCAC CGAGACCTTC GAGTTCCGCG AGCCGCGCCG TCCGCCGGTG CCGCTGGAGC GCGGGGTGAT CATCACCGGC GACCAGGTCA CCGACGCCAG CGCCAGTTTC GACGAGAACG GCCGCCCGCA GGTGAACATC CGCCTGGATG GCCACGGCGG CGAGCTGATG AACCGCGCCA CCCGCAACAA CGTCGGCCGC AGCATGGCGG TGGTGTTCAT CGAGCAGAAG CCGGTGACCC GCTACACCAA GCAGATGGTC GATGGCGTCG AGAAGGAGGT CGCGGTTCCG GCGTTCAAGG AAGAGAAGCA GATCATCAGT CTGGCGACCA TCCAGTCGCC GCTGGGCAAC CAGTTCCGCA TCACCGGCCT CGATGGCCCG GGCGAGTCCT CCGAACTGGC CCTGCTGCTG CGTGCCGGCG GCCTGGCTGC ACCGATGTAC TTCGCCGAAG AACGCACCAT CGGCCCGAGC CTGGGGGCGG ACAACATCGC CAAGGGTGTC GATGCGTCGC TCTGGGGCAT GCTCTTCGTA TCGCTGTTCA TCATCGTCAT CTACCGTTTC TTCGGCGTGA TCGCCACCGT TGCGCTGGCC TTCAACATGG TCATGCTGGT AGCGCTGATG TCGATCCTCG GCGCGACCCT GACCCTGCCG GGCATCGCCG GTATCGTGCT GACCATGGGC ATGGCGGTGG ACGCCAACGT GCTGATCTTC TCGCGGATAC GCGAGGAGCT GGCCAATGGC ATGTCGGTCC AGAGGGCGAT CCACGAAGGC TTCAACCGTG CCTTCACCGC GATCCTCGAC GCCAACCTGA CCTCGCTGCT GGTCGGCGGC ATCCTCTACG CCATGGGCAC CGGCCCGGTG AAAGGATTTG CCGTGACCAT GTCGCTCGGC ATCATCACCT CGATGTTCAC GGCCATCATG GTCACCCGCG CAATGGTCAA CCTGATCTTC GGCGGGCGTG ACTTCAAGAA GCTGTGGATC TAA
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Protein sequence | MLNKYPLWKY LLILAVLAVG FIYSAPNLYP DDPAVQISGA STALQVTQAD VDRAAKALTD AGIAVKANSL SKKGGLIRLV KQDDQLPAKE VVRRTLGDDY VVALNLAQTT PEWLRKLGGS PMKLGLDLSG GVHFLLEVDM DKAVDARLKV YESEVKSLLR KERVRYRSLP IQDRAIQLGF TDSESLDKAR SLIAKDFRDF EVVPEERNGL QVLRVALTQA KLAEIREYSI KQNLTTVRNR VNELGVSEPL VQRQGANRIV VELPGVQDTA EAKRILGKTA NLEFRLAAEP DALKSATETF EFREPRRPPV PLERGVIITG DQVTDASASF DENGRPQVNI RLDGHGGELM NRATRNNVGR SMAVVFIEQK PVTRYTKQMV DGVEKEVAVP AFKEEKQIIS LATIQSPLGN QFRITGLDGP GESSELALLL RAGGLAAPMY FAEERTIGPS LGADNIAKGV DASLWGMLFV SLFIIVIYRF FGVIATVALA FNMVMLVALM SILGATLTLP GIAGIVLTMG MAVDANVLIF SRIREELANG MSVQRAIHEG FNRAFTAILD ANLTSLLVGG ILYAMGTGPV KGFAVTMSLG IITSMFTAIM VTRAMVNLIF GGRDFKKLWI
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