| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_09500 |
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| Symbol | opmD |
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| ID | 4382218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 814846 |
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| End bp | 816309 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 639323322 |
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| Product | outer membrane protein |
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| Protein accession | YP_788911 |
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| Protein GI | 116052245 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCGCT CCTACCCGAA CCTTTCGCGC CTGGCGCTGG CCCTGGCGGT CGGCACCGGC
CTGGCCGCCT GCAGCGTCGG CCCCGACTAC CAGCGTCCGC AGTCGCCGCC GCCACGCGTC
GCCAGCGAGC ACCTCGACGA GTTCTCCGGC GAGCGGCGGG AAGCGCCCTG GTGGAGCTTC
TTCGACGATC CGCAACTGGT GCGCCTGGTC GACCAGGCGC TGGCGCGCAA CCACGACATC
CGCGAGGCCC GCGCCAACCT GCGCAGCGCC CGCGCGCTGT TCGACGACCG CTGGCTCGAC
CAGTTGCCGC AGGTCACCAG CCAGGCCGGC TACAGCCGCA GCATCGAACA ACAGCTGGAC
TACGACGGCG AGCCGCGCCG GCGCCTGGCG GAGAGCTACC GCGCCGGCTT CGACGCGCAG
TGGGAAATCG ACCTGTTCGG CCGCCTCGGC CGACTTTCCG ACGCCGCCCT GGCCCGCGCC
GAAGCGGCCG ACGCCGACCT CCGGCTGGTA CGCCTGAGCA TCGCCGCCGA CACCGCCCGC
GCCTACTTCG AGATCCAGGG CTACCAGCGC CGGCTGGACG TGGCGCGCGC CCAGGTGCGC
AGTTGGCGCG ACACCCTGGA GCTGACCCGC AGCAGCCTGC AACTGGGCAG CGGCCTGCCG
GAGGACGTGG AGAACGCCCA GGCCAACCTG CTGCGCAGCG AAGCGGCGAT TCCGCCACTG
ACGACCGCGC TGGAGAGCGC CCGCTATCGC CTCGACGTGC TGCGCGGCGA GGCACCGGGC
AGCGGCGCGC CGATCCTCGA CGGTGGCGGC GCCGCGCCAT TGGCGAAGAA CCTGCCGCTG
GGCGACGTCG ACCGCCTGAT CCTCCAGCGC CCCGACGTAG TTAGCGCCGA GCGGCAACTG
GCAGCGAGCA CCGAAGACGT CGGCGCGGCC ACCGCCGAAC TCTATCCGCG CCTCGACCTG
GGCGGCTTCA TCGGTTTCTT CGCCCTGCGC AGCGGCGACC TCGGCAGCGC CTCGCGCGCC
TTCGAACTGG CGCCCAGCGT CAGTTGGCCG GCGTTCCGCC TGGGCAACGT GCGGGCCCGC
CTGCGCGCCG TCGAGGCGCA GTCCGACGCC GCGCTGGCGC GCTACCAGCG CTCCCTGCTG
CTGGCCCAGG AGGACGTCGG CAACGCGCTC AACCAACTGG CCGAACACCA GCGTCGGCTG
GTCGCCCTGT TCCAGTCCGC GACCCATGGC GCGAACGCCC TGGAGATCGC CAACGAACGC
TACCGCGCCG GCGCCGGCAG CTACCTGGCG GTGCTGGAGA ACCAGCGCGC GCTGTACCAG
ATCCGCGAGG AACTGGCGCA GGCGGAGACC GCCTCGTTCG TCAACGTCAT CGCCCTCTAC
AAGGCGCTCG GCTGGGGCAG CGGCGACCTG GCGCCGGGCG CCGGCCAACT GGCCGCCGGC
GAAACCGCCG GGGCCAGCCG TTGA
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| Protein sequence | MKRSYPNLSR LALALAVGTG LAACSVGPDY QRPQSPPPRV ASEHLDEFSG ERREAPWWSF
FDDPQLVRLV DQALARNHDI REARANLRSA RALFDDRWLD QLPQVTSQAG YSRSIEQQLD
YDGEPRRRLA ESYRAGFDAQ WEIDLFGRLG RLSDAALARA EAADADLRLV RLSIAADTAR
AYFEIQGYQR RLDVARAQVR SWRDTLELTR SSLQLGSGLP EDVENAQANL LRSEAAIPPL
TTALESARYR LDVLRGEAPG SGAPILDGGG AAPLAKNLPL GDVDRLILQR PDVVSAERQL
AASTEDVGAA TAELYPRLDL GGFIGFFALR SGDLGSASRA FELAPSVSWP AFRLGNVRAR
LRAVEAQSDA ALARYQRSLL LAQEDVGNAL NQLAEHQRRL VALFQSATHG ANALEIANER
YRAGAGSYLA VLENQRALYQ IREELAQAET ASFVNVIALY KALGWGSGDL APGAGQLAAG
ETAGASR
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