| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_09210 |
|---|
| Symbol | pchA |
|---|
| ID | 4382939 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 780267 |
|---|
| End bp | 781697 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639323299 |
|---|
| Product | salicylate biosynthesis isochorismate synthase |
|---|
| Protein accession | YP_788888 |
|---|
| Protein GI | 116052268 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1169] Isochorismate synthase |
|---|
| TIGRFAM ID | [TIGR00543] isochorismate synthases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.059439 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 0.799478 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGGC TGGCGCCCCT GAGCCAGTGC CTGCACGCCT TGCGCGGCAC CTTCGAGCGC
GCCATCGGCC AGGCGCAGGC GCTCGATCGT CCGGTGCTGG TGGCGGCGTC GTTCGAGATC
GACCCATTGG ACCCGCTGCA GGTATTCGGT GCCTGGGACG ACCGGCAAAC GCCCTGCCTG
TACTGGGAAC AGCCCGAGCT GGCGTTCTTC GCCTGGGGCT GCGCCCTGGA GCTGCAAGGC
CACGGCGAAC AGCGCTTCGC CCGGATCGAG GAAAACTGGC AATTGCTCTG CGCCGACGCC
GTGGTCGAGG GCCCGCTGGC GCCGCGCCTG TGCGGCGGAT TCCGCTTCGA TCCGCGCGGC
CCGCGCGAGG AACACTGGCA AGCCTTCGCC GATGCCAGCC TGATGCTCGC CGGCATCACC
GTGCTGCGCG AGGGCGAACG CTACCGGGTA CTCTGCCAAC ACCTGGCCAA GCCCGGCGAA
GATGCCCTGG CCCTGGCCGC CTACCACTGC TCGGCGCTAC TGCGCCTGAG GCAGCCGGCC
AGGCGCCGGC CCTCGGGGCC GACCGCTGGC GCGCAGGGCG ACGCTTCGGC GCTGGAGCGC
AGGCAATGGG AAGCCAAGGT GAGCGACGCG GTAAGCAGTG TCCGCCAGGG ACGCTTCGGC
AAGGTCGTGC TGGCCCGCAC CCAGGCCCGG CCTCTCGGCG ACATCGAGCC GTGGCAGGTC
ATCGAACACC TGCGCCTACA ACATGCCGAC GCCCAGCTGT TCGCCTGTCG CCGCGGCAAC
GCCTGCTTCC TCGGCGCCTC CCCGGAACGC CTGGTCCGCA TTCGCGCCGG CGAGGCGCTC
ACCCATGCCC TGGCCGGGAC CATCGCCCGC GGCGGCGATG CCCAGGAAGA TGCGCGGCTC
GGACAGGCCC TGCTGGACAG CGCCAAGGAC AGGCACGAAC ACCAGTTGGT GGTGGAGGCG
ATCCGTACGG CCCTGGAACC CTTCAGCGAG GCGCTGGAAA TCCCCGATGC GCCTGGCCTG
AAACGACTGG CGCGAGTCCA GCACCTGAAC ACGCCGATCC GCGCCCGCCT CGCCGACGCA
GGCGGCATCC TGCGGCTGCT GCAGGCGCTG CATCCGACCC CCGCGGTGGG CGGCTACCCA
CGCAGCGCGG CGCTGGACTA CATCCGCCAG CACGAAGGGA TGGATCGTGG CTGGTACGCC
GCGCCGCTGG GCTGGCTCGA CGGCGAAGGC AACGGCGATT TCCTGGTGGC GCTGCGCTCG
GCCCTGCTCA CGCCGGGCCG GGGCTACCTG TTCGCCGGCT GCGGTCTGGT AGGCGATTCG
GAACCGGCCC ACGAGTATCG CGAAACCTGC CTTAAGCTCA GTGCCATGCG GGACGCTCTG
TCCGCCATAG GCGGCCTGGA CGAAGTGCCC TTGCAGCGCG GCGTCGCCTG A
|
|---|
| Protein sequence | MSRLAPLSQC LHALRGTFER AIGQAQALDR PVLVAASFEI DPLDPLQVFG AWDDRQTPCL
YWEQPELAFF AWGCALELQG HGEQRFARIE ENWQLLCADA VVEGPLAPRL CGGFRFDPRG
PREEHWQAFA DASLMLAGIT VLREGERYRV LCQHLAKPGE DALALAAYHC SALLRLRQPA
RRRPSGPTAG AQGDASALER RQWEAKVSDA VSSVRQGRFG KVVLARTQAR PLGDIEPWQV
IEHLRLQHAD AQLFACRRGN ACFLGASPER LVRIRAGEAL THALAGTIAR GGDAQEDARL
GQALLDSAKD RHEHQLVVEA IRTALEPFSE ALEIPDAPGL KRLARVQHLN TPIRARLADA
GGILRLLQAL HPTPAVGGYP RSAALDYIRQ HEGMDRGWYA APLGWLDGEG NGDFLVALRS
ALLTPGRGYL FAGCGLVGDS EPAHEYRETC LKLSAMRDAL SAIGGLDEVP LQRGVA
|
|---|
| |