Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_03020 |
Symbol | |
ID | 4383655 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 266282 |
End bp | 267136 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 639322794 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_788395 |
Protein GI | 116053957 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.000201937 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCGCGC CGCGATCGGT TCTCGCCGGC CTGATCGGTG CCGGCATCCA GGCGTCGCGG ACCCCTGCCC TGCACGAGCG CGAGGGCGAC GCCCAGGGCA TCCGCTATCT GTACCGGCTG ATCGATCTCG ACCCGCTGGG CAAGTCGGCG GACGACCTGG AGTTCCTGCT CGCCGCCGCC AGCGACCTCG GCTTCACCGG GCTGAACGTC ACCTTCCCCT GCAAGCAGGC GATCATCCCC CTGCTCGACG AACTCTCCGC CGAGGCGCGC GGCATCGGCG CGGTGAACAC CGTGGTGCTG CGCGATGGCC GGCGCATCGG CCACAACACC GACTGCCTGG GCTTCGCCGA GGGCTTTCGG CGCGGCCTGG CCGACGCGCC GCGCCAGCGC GTGGTGCAGA TGGGCGCGGG CGGCGCCGGC GCGGCAGTGG CCCACGCGCT GCTCGCCGAG GGCGTCGAGC GGCTGGTCCT GTTCGACGTC GACCCGGCGC GGGCCCAGGC CCTCGCGGAC AACCTCAACC AGCACTTCGG CGCGCCACGA GCGCTCGCCG GCAGCGACCT GGCCGGCGCC CTGGGCGACG CCCAGGGATT GGTCAACACC ACCCCGGTGG GCATGGCCAA GCTGCCCGGC ATGCCGGTGC CGGCGGAACT GTTGCGCGCC GACCTGTGGG TCGCCGAGGT GATCTACTTT CCGCTGGAAA CCGAGCTGCT GCGCCAGGCC CGCGCCCTCG GCTGCCGCAC ACTGGACGGC GGCACCATGG CGGTGTTCCA GGCGGTGAAG GCATTCGAAC TGTTCAGCGG AGTAGAGGCT GACGCCGCGC GCATGCAGGC GCACTTCGCC AGCCTGGGCG ACTGA
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Protein sequence | MSAPRSVLAG LIGAGIQASR TPALHEREGD AQGIRYLYRL IDLDPLGKSA DDLEFLLAAA SDLGFTGLNV TFPCKQAIIP LLDELSAEAR GIGAVNTVVL RDGRRIGHNT DCLGFAEGFR RGLADAPRQR VVQMGAGGAG AAVAHALLAE GVERLVLFDV DPARAQALAD NLNQHFGAPR ALAGSDLAGA LGDAQGLVNT TPVGMAKLPG MPVPAELLRA DLWVAEVIYF PLETELLRQA RALGCRTLDG GTMAVFQAVK AFELFSGVEA DAARMQAHFA SLGD
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