| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6559 |
|---|
| Symbol | |
|---|
| ID | 4315463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 1243711 |
|---|
| End bp | 1245315 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638154403 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_778437 |
|---|
| Protein GI | 115361300 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.830295 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGGC CGTCCGACCG GCCGCCCAAC GGGGCCTCTT CGTCCGGCGG CGCGTGGCGG
CCCGCCGCGA ACCCGTGGGT CATCGCGATC GTCGTCACGC TCGCCGCGTT CATGGAGGTG
CTCGACACGA CGATCGTCAA CGTCGCGCTG CCGCATATCG CCGGGACGAT GTCGGCGAGC
TACGACGAGG CGACCTGGAC GCTCACGTCA TACCTCGTCG CGAACGGCAT CGTGCTGCCG
ATTTCCGGCT TCCTCGGGCG CCTGCTCGGC CGCAAGCGCT ACTTCCTGCT GTGCATCGCC
GCGTTCACCG TGTGCTCGTT CCTGTGCGGC GTCGCGACCA ACCTGGGCGA ACTGATCGTG
TTCCGCGTGC TGCAGGGCCT CTTCGGCGGC GGGCTGCAGC CGAACCAGCA GTCGATCATC
CTCGACACGT TTCCGCCCGA ACAGCGCAAC CGCGCGTTCT CGATCTCGGC GATCGCGATC
GTCGTCGCGC CGGTGCTCGG GCCGACGCTC GGCGGCTGGA TCACCGATCA TTTCTCGTGG
CGCTGGGTGT TCCTGCTCAA CGTGCCGATC GGCGCGCTGA CCGTGCTCGC GGTGATGCAG
CTCGTCGAGG ATCCGCCGTG GCGACGCGGC GCCGAGCGCG GGATCTCGGT CGACTACATC
GGCATCGGGC TGATCGCGAT CGGGCTCGGC TGCCTGCAGG TGATGCTCGA TCGCGGCGAG
GACGAGGACT GGTTCGGATC GAACTTCATC CGCGTCTTTG CGGTGCTGTC GGCACTCGGC
CTGATCGGCG CGACGCTGTG GCTGCTGCGT GTGAAGAAGC CGGTGGTCGA TCTGTCGTGC
CTGCGCGACC GCAACTTCGC GCTCGGCTGC GTGACCATCG CGACGTTCGC GGCCGTGCTG
TACGGCAGCG CGGTGATCGT CCCGCAACTC GCGCAGCAGC ACCTCGGCTA TACGGCGACG
CTCGCGGGCC TCGTGCTGTC GCCCGGCGCG TTGCTCATCA CGCTGGAAAT CCCGCTCGTG
AGCCGGCTGA TGCCGCACGT GCAGACGCGC TATCTGGTCG GCTTCGGTTT CGTGCTGCTG
TCGGTCGCAC TCGTCTATTC GCGGCTGCTG GTGCCGGACA TCGATTACCG GCACCTGGTG
ATGATCCGCT GCGCGCAGTC GCTCGCGATC GGCTTCATGT TCGTGCCGAT CACGACGCTC
GCGTACCTGA CCGTCCCGCA GCGGCTCAAC GACGACGCCT CCGCGCTGTT CACGATGTTC
CGCAACGTCG CGGGCTCGAT CGGCATCTCG GTGTCGACCG CGCTGATCCG CGAGCGGACG
CAGGCGCGCA TGGCGCACCT GTCCACGCAC ATGTCGCCGC TGTCGCAGAA CTTTCAGGAC
GCGCTGCACG AGAACGCGCG CGCGATCGGC GCGCTGTCGG GCGTGCCGCC GCCGGCCGCG
CTGCAAACCG CGACCGGCCG GCTGTACGAG ACGTTCATCT CGCAGGCGAC GATCCTCGCG
TATATCGACG TGTTCGCGAT CCTCGCGGTG TTCTGCGCGT TCAGCATTCC GCTGACGTTC
CTGTTCTCGC CGGTGAAGGC CGCACGCGGC GCGGGAGGGC ATTGA
|
|---|
| Protein sequence | MNRPSDRPPN GASSSGGAWR PAANPWVIAI VVTLAAFMEV LDTTIVNVAL PHIAGTMSAS
YDEATWTLTS YLVANGIVLP ISGFLGRLLG RKRYFLLCIA AFTVCSFLCG VATNLGELIV
FRVLQGLFGG GLQPNQQSII LDTFPPEQRN RAFSISAIAI VVAPVLGPTL GGWITDHFSW
RWVFLLNVPI GALTVLAVMQ LVEDPPWRRG AERGISVDYI GIGLIAIGLG CLQVMLDRGE
DEDWFGSNFI RVFAVLSALG LIGATLWLLR VKKPVVDLSC LRDRNFALGC VTIATFAAVL
YGSAVIVPQL AQQHLGYTAT LAGLVLSPGA LLITLEIPLV SRLMPHVQTR YLVGFGFVLL
SVALVYSRLL VPDIDYRHLV MIRCAQSLAI GFMFVPITTL AYLTVPQRLN DDASALFTMF
RNVAGSIGIS VSTALIRERT QARMAHLSTH MSPLSQNFQD ALHENARAIG ALSGVPPPAA
LQTATGRLYE TFISQATILA YIDVFAILAV FCAFSIPLTF LFSPVKAARG AGGH
|
|---|
| |