Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_6558 |
Symbol | |
ID | 4315462 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008392 |
Strand | - |
Start bp | 1241933 |
End bp | 1243708 |
Gene Length | 1776 bp |
Protein Length | 591 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 638154402 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_778436 |
Protein GI | 115361299 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGATGA ATCGACAGCG CGGCAGCCGC CGGCATGCGC TGCAACCGCT CGGCCTCGCC GCGATGCTGG CGGCCTGCGC GGCGCTCGCG GGCTGTACCG TCGGGCCGGA TTTCAAGCCG CCGCAGGCGG ATGTGCCGGC GAACTGGCAT GACCTGCGGG CGTCGGCTGC GGCGGGATCG CCGGCGTCGG GCGCATCGCC GGCATCGGGT GAATCGGGCG TGTCGGGCGC ATCGGGTGCA TCGGGTGCGG CGGCCGCATC GGGTACATCG GGTACATCGC GCGCGTCGGC CGCCGGCGCG CACGCGCCAT CGTCGCCGAC GACCGGCGCC GATCCCGCCC CGCGCTGGTG GCGCGCGTTC GGCGATCCGC TGCTCGATCG CCTCGTCGAG CGTGCCGCGC GCGACAACCT CGACGTGCAG GCGGCCGTGC TGCGCATCGC GCAGGCGCGT GCGCAGGTTC GCGCGGCCGC CGCGCAGGGC TTGCCGAACG TGCGGGCGAA CGCGAGCTAT CAGCGCGAAC AGTTGGGCCT GAAAGGCATC ATCGAGGAAC AGGGTATCGA CCAGCGCGTC GATCGTCTCG GCGCGCCCGG TTCACCGCTC GACCGCTTCG GGCCGGGCAC CGGCGCGAGC GTGCAGCAGG GCGCACGCGC CGCGATCGAT TCGCTCGAAG CGCCGGTCAA TGTGTGGCAG GCCGGGTTCG ACGCATCGTG GGAACTCGAC CTGTTCGGGC GCGTGCGTCG CTCGGTCGAA TCGGCCGGCG CGCAGGCGAG CGCCGCGGTC GCGAGCCGCG ACGATGCGCT GCTGTCGCTG GAGGCCGAAG TCGCGCAGAC CTATCTGCAA CTGCGCGGCG CCGAAGCGCA ACGCGCGCTG GCCGACGACC TGCAACGCGC GCAGCGCGAC CTGCTGGATC TCACGCGCGA GCAGGCCGCG CACGGTCTCG CGAGCGACCT CGACGTGCGC AGCGCCGACG CGCGGCTCGC GCAGATTCGT GCGCAGCTGC CGCAGTTCGA CCAGCAGATC GTGCTGCTGC GCAATGGCCT CGCGTATTTG GTCGGAGGGG CCCCGGGCGC GCTCGACGAC TGGCTCGACG CGCCGCGCGC GTTGCCGGGC GTGCCGCCCA CCGTGCCGGT GGGGCTGCCG TCGACGCTGG CGCGCCGGCG GCCCGACATT CGCCGCGCGG AGGCCGAGCT GCATGCGGCG ACCGCCGATG TCGGCGTCGC GGTCGCGCAG TTCTATCCGG ACATCTCGCT GACCGGGCAG GTCGGGTTGC GCGCGGCGCA CGTGCGCGAG CTCGCGCACT GGTCGCATCT GTTCTACTCG TTCGGGCCGG CCGTATCGCT GCCGATTTTT TCGGGCGGGC AACTCGTATC GAACCTGCGG CTATCGCAGG CGCGCCAGGC CGAAGCGGCG CTCGCCTATC GACGGGCCGT GCTCGTCGCG CTGCGCGACG TCGACAACGC GCTGGCCGTC TACCGCACCG ACCAGGCGCG CGCGGCCGCG CTCGACGACG CGGTCAAGGC CGAGCAGGGC GCGCTGGAAC TCGCGCGCGA TCGTTACCGG AAGGGGTTGT CGCCGTTCCT CGACGTGCTC GACGCCGAGC GGCAATGGTC GGAGGGGCGG CAGCAGGCGG TGCAGGGGGC GTTGCAGACG ACGACCGATC TCGTCGCGCT GTACAAGGCG CTGGGCGGCG GCTGGCAGAC GACCGGGCCG GCGGCGGATG CGGCTACGGT CGGCGCGGTG GCGCCATCGC GAGCCGATAT GACGCGGGCG CAATAG
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Protein sequence | MTMNRQRGSR RHALQPLGLA AMLAACAALA GCTVGPDFKP PQADVPANWH DLRASAAAGS PASGASPASG ESGVSGASGA SGAAAASGTS GTSRASAAGA HAPSSPTTGA DPAPRWWRAF GDPLLDRLVE RAARDNLDVQ AAVLRIAQAR AQVRAAAAQG LPNVRANASY QREQLGLKGI IEEQGIDQRV DRLGAPGSPL DRFGPGTGAS VQQGARAAID SLEAPVNVWQ AGFDASWELD LFGRVRRSVE SAGAQASAAV ASRDDALLSL EAEVAQTYLQ LRGAEAQRAL ADDLQRAQRD LLDLTREQAA HGLASDLDVR SADARLAQIR AQLPQFDQQI VLLRNGLAYL VGGAPGALDD WLDAPRALPG VPPTVPVGLP STLARRRPDI RRAEAELHAA TADVGVAVAQ FYPDISLTGQ VGLRAAHVRE LAHWSHLFYS FGPAVSLPIF SGGQLVSNLR LSQARQAEAA LAYRRAVLVA LRDVDNALAV YRTDQARAAA LDDAVKAEQG ALELARDRYR KGLSPFLDVL DAERQWSEGR QQAVQGALQT TTDLVALYKA LGGGWQTTGP AADAATVGAV APSRADMTRA Q
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