Gene Bamb_6506 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_6506 
Symbol 
ID4315410 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp1191024 
End bp1192661 
Gene Length1638 bp 
Protein Length545 aa 
Translation table11 
GC content61% 
IMG OID638154350 
ProductAMP-dependent synthetase and ligase 
Protein accessionYP_778384 
Protein GI115361247 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism
[I] Lipid transport and metabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00389964 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.364964 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACAA CGGCAGACAA TCCCTATACG ATCGGACTCG AGCGCGACCG GCCGAACTTC 
ATTGCCTTGT CGCCGCTGAC GTTTCTCGAA CGCGCCGCGT CTGTCTGGCC GGAGCGCACG
GCCATCGTGC ACGGCACGAT TCGCCGCGAC TGGGCCGAAA CCTATCGGCG TTGCCGGCTG
CTCGCCGGTG CGCTGCGCGG GCGCGGCATT GGCAACGGCG ATACGGTGGC GATGATCGCG
GCCAATACAC CGGAACTGTT CGAGGCGCAT TTCGGTGTAC CGCTTTGCGG CGCCGTACTG
AACACCATCA ACACACGGCT CGATGCCGAC ACGATCGCTT TCATTCTCGA CCACGGCGAC
GCGAAGCTGC TGATCACCGA CCGCGAATTC TCCCCGACAG TGAAGAAAGC CCTGGCACGG
CTTGGCCGCG TCATTCAGGT CATCGACATC GACGATCCAC AGTGTGGAGA AGGCGATCTG
CTCGGCGAAA AAGACTACGA AGCGTTGCTG CAGGAGGCCA CGCACACGGA ATTCTCTGTC
GCGATGCCGG AAGACGAATG GCAGGCCATT TCGCTTAACT ACACATCCGG CACGACGGGC
AATCCGAAAG GCGTGGTGTA TCACCATCGC GGCGCATATC TGAACGCCGT GTCGAATGCA
CTATCGTGGC ATCTGGACGA GGACACGACC TATTTGTGGA CCTTGCCGAT GTTTCATTGC
AATGGTTGGT GCTTTCCCTG GACCATGGCG TTGGTGGCCG GCACCAGTGT CTTTCTGCGC
CATACGCGGG CCGAGCGGAT TCTCGCCGCC ATCCGCACCG AGGCGGTCAC GCATTTTTGT
GCCGCGTCCG TGGTGTTGAA CATGATCAAT AACGCCGCGC CGGAGCTGAA AGCGGGCATT
CGTCACCGAG TCAAGGTCAT GACCGGCGGT GCGCCGCCGC CCGCTTCGGT GATCGCCGGC
ATGGAGTGCA TGGGCTGGGA GGTGACGCAC GCGTACGGGT TGACCGAGTC TTATGGGCCG
GTCGTGCAAT GCGTGTGGCG CGAGTCGTGG AATGCGCTCG AGCTCGATGC GAAAGCGCGA
CTCAAGGCCC GCCAGGGTGT GCGCGGCCCT GTTCTCGAGG CAATGATGGT GGCCCGCCCG
GATACGCTGG AGCCCGTTCC AAAAGACGGG CAAACGCTCG GCGAGGTATT TCTGCGCGGC
AACAACGTCA TGAAGGGCTA CCTGAAGAAT CCGGACGCCA CCGTGGAGGC ATTTTCCGGC
GGGTGGTTTC ACACGGGCGA TCTCGGGGTA TGGCATCCCG ATGGCTACCT GGAAATCAAG
GATCGCTCGA AGGACATCAT CATCTCGGGA GGCGAAAACA TTTCGTCGAT CGAGATCGAG
GACATACTGT ATTCCCATCC CGCTGTTCTG GAGGCGGCAA TCGTCGCGCG TCCCGACGAC
AAGTGGGGCG AGACACCTTG TGCTTTCATC ACGCTCAAAG ACGATTCGGT CGTGACTGAA
GCGGACATCA TCGCGTTTTG CCGCGAGCGG CTGGCACATT TCAAGGTGCC CAAGACCATC
GTGTTCTCGC CACTGCCGAA GACTGCGACC GGCAAGATCC AGAAGTTCAA CTTGAGGGAA
CGAGCGCGCC AGCTGTGA
 
Protein sequence
MKTTADNPYT IGLERDRPNF IALSPLTFLE RAASVWPERT AIVHGTIRRD WAETYRRCRL 
LAGALRGRGI GNGDTVAMIA ANTPELFEAH FGVPLCGAVL NTINTRLDAD TIAFILDHGD
AKLLITDREF SPTVKKALAR LGRVIQVIDI DDPQCGEGDL LGEKDYEALL QEATHTEFSV
AMPEDEWQAI SLNYTSGTTG NPKGVVYHHR GAYLNAVSNA LSWHLDEDTT YLWTLPMFHC
NGWCFPWTMA LVAGTSVFLR HTRAERILAA IRTEAVTHFC AASVVLNMIN NAAPELKAGI
RHRVKVMTGG APPPASVIAG MECMGWEVTH AYGLTESYGP VVQCVWRESW NALELDAKAR
LKARQGVRGP VLEAMMVARP DTLEPVPKDG QTLGEVFLRG NNVMKGYLKN PDATVEAFSG
GWFHTGDLGV WHPDGYLEIK DRSKDIIISG GENISSIEIE DILYSHPAVL EAAIVARPDD
KWGETPCAFI TLKDDSVVTE ADIIAFCRER LAHFKVPKTI VFSPLPKTAT GKIQKFNLRE
RARQL