Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_6422 |
Symbol | |
ID | 4315326 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008392 |
Strand | + |
Start bp | 1048581 |
End bp | 1050245 |
Gene Length | 1665 bp |
Protein Length | 554 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 638154266 |
Product | major facilitator transporter |
Protein accession | YP_778300 |
Protein GI | 115361163 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.726262 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACAACG AGCTCACCGC GGCACGCCGT AGTGCCTTCA GCGCCGACGA GAGGAGAGTG GTTTTTGCCG CCTCCCTCGG AGCTGTATTC GAATGGTACG ACTTCTTCTT ATATGGATCG CTGGCGGCAC TGATTGCTGC GCAATTCTTC AGTAGTCTGA ATCATACGAC TGCGTTTGTT TTCGCGCTGC TGACCTTCGC GGCCGGGTTC ATTGTTCGAC CGATTGGAGC GCTTGTATTC GGCAGACTGG GCGATCTCGT CGGCCGAAAA CACACGTTTC TATTGACGAT TCTCATCATG GGTTGCTCGA CGCTGTTGGT CGGGTTGTTG CCTGGCTACG CAACCCTGGG CGTTGCCGCA CCGATTATCT TGGTCGTTCT TCGAATGCTC CAGGGCTTGG CGCTTGGCGG AGAGTACGGC GCGGCGGCGA CATACGTTGC CGAGCACGCG CCGCATGACA AGCGAGGCGG GTGGACCTCA TGGATTCAGA CCACGTCCAC GATCGGGCTG CTGCTGTCGC TGGTCTTGAT CATCACCGTG CGTTCGCTGA CGGGTACATC GTTCGAGGTG TGGGGGTGGC GCATCCCCTT CTTGTTTTCC GGCGTCCTGT TGGGGATTTC CGTATATGTG CGTCTTTCGA TGCATGAGTC ACCGGCGTTC CAGCGCATCA AGGCAGAGGG ACGAACGTCT CGCGCACCGT TGTCGGAAGC ATTTGGTCAG TGGCGCTATC TGAAGCTCGT CCTGCAGGCT CTGTTTGGAT TGCTTGCGGG ACAGGCGGTT GTATGGTTCA CCGCGCTTTT TTACGCGATG TTCTTTCTGA CGCAGACATT GAAGGTCGAT GCCGGCACAA CGAACTTGTT AGTGGGACTT GCGCTGGTCA TCAGTACACC GCTCTACGTA TTCTTTGGAC GTCTTTCCGA CCGCATCGGA CGAAAGCCGA TCATTCTGTG TGGCTCGTTC CTGGCGGCAT TGACTATCGT GCCGATCTTT CATGGGTTGA CTCACTTTGC CAACCCGGCA TTGGCTGCCG CTCAGGCGTC TTCGCCGGTG GCCATCGTCA GTGATCCGGC CGACTGCTCG TTCCAGTTCA ATCCAACCGG TACCGCATCG TTCAACAGCG CGTGTGACGT TGCGCGCCGT GTGCTGTCGG CAAATTCCGC AAGTTACGCG ACAGTCGATG CAGCCGCCGG GTCAAGCACG CGCGTCAAGA TTGGCGCAAC GGAGATCGCT GCGCCTTCGT TGAAAGGGCT TGCTCCGGCA CAAGCGAAAG TAGCGGAGCA GCAGTTCAGG GTGGCCACGA TCAGGGCGTT GGGCGAGGCA GGATATCCGC TGAAGGCTAA TCCGGAGACG GTGAATCGCC CGATGATTCT CGTTCTGCTT GTGCTGCTCA TGGCGTACGG AGCGATGACC CTTGGCCCTA TTGCCGCCAT TCTTGTCGAG ATGTTCCCCA CACGGATCAG GTACACAGCG ATGTCGTTGC CGTATCACGT CGGCAACGGC TATTTTGGTG GGCTACTTCC GACGGTGTGT TTTGCGCTGG TTGCGCAGAC AGGGGACATC TACTTCGGGC TCTGGTATCC GGTGACAGTC GCAGCGGTGT CGTTCGTCAT AGGGCTGGTG TTCATCCGAG AACCTCGTCG AGACGCACTT TATAGCGACG ACTAA
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Protein sequence | MHNELTAARR SAFSADERRV VFAASLGAVF EWYDFFLYGS LAALIAAQFF SSLNHTTAFV FALLTFAAGF IVRPIGALVF GRLGDLVGRK HTFLLTILIM GCSTLLVGLL PGYATLGVAA PIILVVLRML QGLALGGEYG AAATYVAEHA PHDKRGGWTS WIQTTSTIGL LLSLVLIITV RSLTGTSFEV WGWRIPFLFS GVLLGISVYV RLSMHESPAF QRIKAEGRTS RAPLSEAFGQ WRYLKLVLQA LFGLLAGQAV VWFTALFYAM FFLTQTLKVD AGTTNLLVGL ALVISTPLYV FFGRLSDRIG RKPIILCGSF LAALTIVPIF HGLTHFANPA LAAAQASSPV AIVSDPADCS FQFNPTGTAS FNSACDVARR VLSANSASYA TVDAAAGSST RVKIGATEIA APSLKGLAPA QAKVAEQQFR VATIRALGEA GYPLKANPET VNRPMILVLL VLLMAYGAMT LGPIAAILVE MFPTRIRYTA MSLPYHVGNG YFGGLLPTVC FALVAQTGDI YFGLWYPVTV AAVSFVIGLV FIREPRRDAL YSDD
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