Gene Bamb_6422 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_6422 
Symbol 
ID4315326 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp1048581 
End bp1050245 
Gene Length1665 bp 
Protein Length554 aa 
Translation table11 
GC content58% 
IMG OID638154266 
Productmajor facilitator transporter 
Protein accessionYP_778300 
Protein GI115361163 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.726262 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACAACG AGCTCACCGC GGCACGCCGT AGTGCCTTCA GCGCCGACGA GAGGAGAGTG 
GTTTTTGCCG CCTCCCTCGG AGCTGTATTC GAATGGTACG ACTTCTTCTT ATATGGATCG
CTGGCGGCAC TGATTGCTGC GCAATTCTTC AGTAGTCTGA ATCATACGAC TGCGTTTGTT
TTCGCGCTGC TGACCTTCGC GGCCGGGTTC ATTGTTCGAC CGATTGGAGC GCTTGTATTC
GGCAGACTGG GCGATCTCGT CGGCCGAAAA CACACGTTTC TATTGACGAT TCTCATCATG
GGTTGCTCGA CGCTGTTGGT CGGGTTGTTG CCTGGCTACG CAACCCTGGG CGTTGCCGCA
CCGATTATCT TGGTCGTTCT TCGAATGCTC CAGGGCTTGG CGCTTGGCGG AGAGTACGGC
GCGGCGGCGA CATACGTTGC CGAGCACGCG CCGCATGACA AGCGAGGCGG GTGGACCTCA
TGGATTCAGA CCACGTCCAC GATCGGGCTG CTGCTGTCGC TGGTCTTGAT CATCACCGTG
CGTTCGCTGA CGGGTACATC GTTCGAGGTG TGGGGGTGGC GCATCCCCTT CTTGTTTTCC
GGCGTCCTGT TGGGGATTTC CGTATATGTG CGTCTTTCGA TGCATGAGTC ACCGGCGTTC
CAGCGCATCA AGGCAGAGGG ACGAACGTCT CGCGCACCGT TGTCGGAAGC ATTTGGTCAG
TGGCGCTATC TGAAGCTCGT CCTGCAGGCT CTGTTTGGAT TGCTTGCGGG ACAGGCGGTT
GTATGGTTCA CCGCGCTTTT TTACGCGATG TTCTTTCTGA CGCAGACATT GAAGGTCGAT
GCCGGCACAA CGAACTTGTT AGTGGGACTT GCGCTGGTCA TCAGTACACC GCTCTACGTA
TTCTTTGGAC GTCTTTCCGA CCGCATCGGA CGAAAGCCGA TCATTCTGTG TGGCTCGTTC
CTGGCGGCAT TGACTATCGT GCCGATCTTT CATGGGTTGA CTCACTTTGC CAACCCGGCA
TTGGCTGCCG CTCAGGCGTC TTCGCCGGTG GCCATCGTCA GTGATCCGGC CGACTGCTCG
TTCCAGTTCA ATCCAACCGG TACCGCATCG TTCAACAGCG CGTGTGACGT TGCGCGCCGT
GTGCTGTCGG CAAATTCCGC AAGTTACGCG ACAGTCGATG CAGCCGCCGG GTCAAGCACG
CGCGTCAAGA TTGGCGCAAC GGAGATCGCT GCGCCTTCGT TGAAAGGGCT TGCTCCGGCA
CAAGCGAAAG TAGCGGAGCA GCAGTTCAGG GTGGCCACGA TCAGGGCGTT GGGCGAGGCA
GGATATCCGC TGAAGGCTAA TCCGGAGACG GTGAATCGCC CGATGATTCT CGTTCTGCTT
GTGCTGCTCA TGGCGTACGG AGCGATGACC CTTGGCCCTA TTGCCGCCAT TCTTGTCGAG
ATGTTCCCCA CACGGATCAG GTACACAGCG ATGTCGTTGC CGTATCACGT CGGCAACGGC
TATTTTGGTG GGCTACTTCC GACGGTGTGT TTTGCGCTGG TTGCGCAGAC AGGGGACATC
TACTTCGGGC TCTGGTATCC GGTGACAGTC GCAGCGGTGT CGTTCGTCAT AGGGCTGGTG
TTCATCCGAG AACCTCGTCG AGACGCACTT TATAGCGACG ACTAA
 
Protein sequence
MHNELTAARR SAFSADERRV VFAASLGAVF EWYDFFLYGS LAALIAAQFF SSLNHTTAFV 
FALLTFAAGF IVRPIGALVF GRLGDLVGRK HTFLLTILIM GCSTLLVGLL PGYATLGVAA
PIILVVLRML QGLALGGEYG AAATYVAEHA PHDKRGGWTS WIQTTSTIGL LLSLVLIITV
RSLTGTSFEV WGWRIPFLFS GVLLGISVYV RLSMHESPAF QRIKAEGRTS RAPLSEAFGQ
WRYLKLVLQA LFGLLAGQAV VWFTALFYAM FFLTQTLKVD AGTTNLLVGL ALVISTPLYV
FFGRLSDRIG RKPIILCGSF LAALTIVPIF HGLTHFANPA LAAAQASSPV AIVSDPADCS
FQFNPTGTAS FNSACDVARR VLSANSASYA TVDAAAGSST RVKIGATEIA APSLKGLAPA
QAKVAEQQFR VATIRALGEA GYPLKANPET VNRPMILVLL VLLMAYGAMT LGPIAAILVE
MFPTRIRYTA MSLPYHVGNG YFGGLLPTVC FALVAQTGDI YFGLWYPVTV AAVSFVIGLV
FIREPRRDAL YSDD