Gene Bamb_6354 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_6354 
Symbol 
ID4315258 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp962356 
End bp963939 
Gene Length1584 bp 
Protein Length527 aa 
Translation table11 
GC content66% 
IMG OID638154198 
Productextracellular solute-binding protein 
Protein accessionYP_778232 
Protein GI115361095 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGACG ATATCGACAA CGGCGGCAAG GGCGGCTTCA CGCGCCGCGA CATGATGAAG 
GTCATGGCGG CGAGCGGCAT GATGGCCGCC GGCGCCGGCG GACTGCTGAT GACCCCCGGC
TCTGCATTCG CCGCGCCCGC GCCGAAGCGC GGCGGCAAGA TCCGGGTCGC GAACGAAGCC
GGCTCGACGT CCGATACGCT CGACCCGGCC AAGGGCTCGA CGGGCGCGGA CTACACGCGC
TTCTTCATGT TCTACAGCGG CCTCACGCAG CTCGATGCGA GCCTGACGCC GCAGATGAAC
CTCGCCGAGT CGCTGCAGAC GACCGATGCG AAGACGTGGA TCATCAAGCT GCGCAAGGGC
GTCACGTTCC ACGACGGCAA GCCGGTCGGC CCGGCCGACG TGGTGTTTTC GCTGATGCGC
CACAAGAACG CGGCCACCGC GTCGAAGGTC AAGACGCTTG CCGAACAGTT CGTGGACGCG
AAGGCGAGCG GCCCGGACGA AGTCACGCTC ACGCTCGCCA GCGCGAACGC GGACCTGCCG
GTGATCCTCG CGACGCCGCA ATTGGTGATC GTCAAGGACG GCACAACCGA CTTCTCGACC
GGCATCGGCT GCGGCCCGTA CAAGCTGAAG TCGTTCAAGC CGGGCGTGTC GACCGTCGGC
GTGCGCAACG ACAGCTACTT CAAGCCGGGC AGGCCGTATC TCGACGAGAT CGAGCTGATC
GGCATCAGCG ACAGCGCCGC GCGCCTGAAC GCGCTGCTGT CGGGCGACGT GCACCTGATC
AACGCGATCG ATCCGCGCTC GACGCAGCGG GTCTCGTCGA CGCCGGGCTA CGCGCTGAAG
GAAACCAAGT CGGGCCTTTA TACCGACCTG ATCATGCGCA GCGACAACCC GATCGTCTCG
AGTCCCGATT TCGTCGAAGG GATGAAGTAC CTGTTCGATC GCGAGCAGCT CCGCACGGCG
GTGTTCCGCG GCTACTCGGT GATCGGCAAC GACCAGCCGA TTCCGCCGGG GCACCGCTAC
TTCAACGCGT CGCTGCCGCA GCGGGCGCAC GATCCGGACA AGGCGAAGTT CCTGTTCAAG
AAGGCGGGCG CGCTCGGCGC CACGTTGCCG CCGGTCTATG CGACGTCCGA CGCGAACGGG
TCGATCGAAA TGGCCGTGCT GCTGCAGCAG GCCGGCCAGA AGATCGGGCT GAACCTGCAG
GTCAACCGCG CGTCGCCCGA CGGCTACTGG TCGAACCACT GGATGAAGCA CCCGCTCACC
TTCGGCAACA TCAACCCGCG CTCGAGCGCC GACGTGCTGT TCACGCAGTT CTTCAAGTCG
GATGCGCCGT GGAACGAGTC GGGCTGGAAG AACGCGAAGT TCGACCAGCT GCTGCTCGCC
GCGCGTTCGG AAACCGACGA CGCGAAGCGC AAGCAGATGT ACGGCGACAT GCAGGTGATC
GTGGCGCAGC AGGGCCGGGT CGGCATTCCG GCGTTCATCA GCTTCCTCGA CGGCTACGAC
AAGCGGCTCG CGGGCCTCGG CTCGATCCCC ACCGGGCCGA TGATGGGCTT CACGTTCGCC
GAGAACGTGT GGTGGAACGC ATGA
 
Protein sequence
MSDDIDNGGK GGFTRRDMMK VMAASGMMAA GAGGLLMTPG SAFAAPAPKR GGKIRVANEA 
GSTSDTLDPA KGSTGADYTR FFMFYSGLTQ LDASLTPQMN LAESLQTTDA KTWIIKLRKG
VTFHDGKPVG PADVVFSLMR HKNAATASKV KTLAEQFVDA KASGPDEVTL TLASANADLP
VILATPQLVI VKDGTTDFST GIGCGPYKLK SFKPGVSTVG VRNDSYFKPG RPYLDEIELI
GISDSAARLN ALLSGDVHLI NAIDPRSTQR VSSTPGYALK ETKSGLYTDL IMRSDNPIVS
SPDFVEGMKY LFDREQLRTA VFRGYSVIGN DQPIPPGHRY FNASLPQRAH DPDKAKFLFK
KAGALGATLP PVYATSDANG SIEMAVLLQQ AGQKIGLNLQ VNRASPDGYW SNHWMKHPLT
FGNINPRSSA DVLFTQFFKS DAPWNESGWK NAKFDQLLLA ARSETDDAKR KQMYGDMQVI
VAQQGRVGIP AFISFLDGYD KRLAGLGSIP TGPMMGFTFA ENVWWNA