Gene Bamb_6345 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_6345 
Symbol 
ID4315249 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp951565 
End bp953085 
Gene Length1521 bp 
Protein Length506 aa 
Translation table11 
GC content69% 
IMG OID638154189 
Productdiguanylate cyclase 
Protein accessionYP_778223 
Protein GI115361086 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.155718 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGCAT CCCCTTCGAT CGAGAAAATT GCCGACTGGG CCGGTCGCCA CCACCTGATC 
GTCGGTGTGC TGGGCACGCT GATGTCGGTC GCGGCGCTCG GCATCAGCGC GGTGACGCTG
TGGGCCGCGC GCAGCGAAGT CGTCGAACAT GCGCACGAGA CGTCGCGCAA TGTCGCGGCC
GTCCTCGTCA GTGAGATCGC GCGCACCGTC GAAACGTCCA ACAATGCGCT GGTATCGCTC
GCCGCCGATC TCGGCAACCC CGCGATCGTG CGCCTGAAGG CCGGCTTGCG CCACGACGTG
CTGTTCGAGC GCACGGCCGC GCAATACGTG ACCGGCATGG GCGTGACGGA CCGCGACGGG
CGGCTGATCG ACGGTTGTTG CGGCCCGACC CACAACTGGG ACTTCAGCGA TCGCGACTAC
TTCAAGGTCC ATCGCGATTC GGACAACGTC GGCCTGTACG TGTCCGAGGC GTACCGCGCG
CGTTCGCGCG GCGGCACCGA ATCGATCGCG CTGTCGCGCC GCATCGAACG GCCGGATCAT
GCGTTCAACG GAATCGCGGT GGTCGCCGTC GATCTCGCCT ACTTCGATCA GCTGCTGTCG
CGGTTGAACG TCGGACCGCA CGGCGTCAGC GCGATCCTGC GCGCGGACGG CACGATCCTC
GCGCGCAATC CGCCGTTGAC CGATCACCAG ATGGTGCGCG TGCGCCGGTC GAAGTCGTTC
GAGCGGATGG TGAGCCGCGA AGCGGGTTTC TATGCCGCGC GCTCGAGCAT CGACGGGACG
TTGCGGCTGT ACACGTACCA GCGGGTACCC GGCACGCCGC TGATCGCCGT GGTCGCGCCG
GCCGAGCGCG ACGTGCTGGC CGGCATCACG CGCCTGACGT GGACGGCGGG CGTGTCGGCG
TCCGTGATCG GCGCGCTGTT CTGCGCGGTG GTGTGGCTGC TCGCGTTCGC GCTGCGCGAC
AACCTGCGCA AGCAGACGCT GCTCACGGAC CTCACGCGCA CCGATCCGCT GACGGGCCTG
CACAACCGGC GCGCGCTCGA TGCCGCGCTC GCCGACGAAT GGGAACGGCT GCAGCGCGGC
AGCGACGGCA GCCTGTCGGT GCTGTTCATC GACGCCGATC ACTTCAAGCA GTACAACGAC
CGCTACGGCC ATGCGCAAGG CGACACCGCG CTGCGCTTTC TCGCCGAATG CATCCGCGCG
CATACGCGAC GGCGCGGCGA TCTCGCCGCA CGTTACGGCG GCGAGGAATT CGTCGCGGTG
TTGCCCGACA CGGACGAGCG CGGTGCGCAG CAGGTCGCCG AAGCGATTCG CCACGCCGTG
GAGCGCAACC AGCTCGACGG GTTCGACGCG ACGATGCCGG CCTTCACGGT CAGCATCGGC
TGCGCGACCG GCCATCGCGC GCGGCCGCCG TCCATGCATG CGCTCACGCA TCAGGCCGAC
CTCGCCCTCT ATGCGGCCAA GCGCCAGGGC AGAAACCGCG TGTGCGTCGC CGACGTGGAA
CCGCTCGCAC AAACGGCGTG A
 
Protein sequence
MPASPSIEKI ADWAGRHHLI VGVLGTLMSV AALGISAVTL WAARSEVVEH AHETSRNVAA 
VLVSEIARTV ETSNNALVSL AADLGNPAIV RLKAGLRHDV LFERTAAQYV TGMGVTDRDG
RLIDGCCGPT HNWDFSDRDY FKVHRDSDNV GLYVSEAYRA RSRGGTESIA LSRRIERPDH
AFNGIAVVAV DLAYFDQLLS RLNVGPHGVS AILRADGTIL ARNPPLTDHQ MVRVRRSKSF
ERMVSREAGF YAARSSIDGT LRLYTYQRVP GTPLIAVVAP AERDVLAGIT RLTWTAGVSA
SVIGALFCAV VWLLAFALRD NLRKQTLLTD LTRTDPLTGL HNRRALDAAL ADEWERLQRG
SDGSLSVLFI DADHFKQYND RYGHAQGDTA LRFLAECIRA HTRRRGDLAA RYGGEEFVAV
LPDTDERGAQ QVAEAIRHAV ERNQLDGFDA TMPAFTVSIG CATGHRARPP SMHALTHQAD
LALYAAKRQG RNRVCVADVE PLAQTA