Gene Bamb_6298 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_6298 
Symbol 
ID4315202 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp892702 
End bp894069 
Gene Length1368 bp 
Protein Length455 aa 
Translation table11 
GC content66% 
IMG OID638154142 
Producttype II secretion system protein E 
Protein accessionYP_778176 
Protein GI115361039 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATTGC GCGAACAGAT GTCCTTGTAC CGGACGCAGC CGCAGGCGGC GGGCACCGAA 
CCGGCAGGTG CGGCGCATTC GTCGGTACGC GATGCGTACC AGAAGCTGCG CCGTGAAATT
CACCTGACGG TGCTTGATCG CGTCGAGCTC GAGCGCCTGT CACGCCTGCC GCAGGAACAG
GTCCGGCAGG AAATCTCGTC GCTGATCTCG CGCATTCTCG ACGAGGAGCG GCTACTCGCG
AACGACATCG AGCGGCGCCA GCTCGCGATC GACGTGTACG ACGAAATGTT CGGTTTCGGC
CCGCTCGAGT CGCTGCTGCG CGACCCCGGC ATCTCCGACA TCCTCGTGAA CACGTACCGG
CAGGTTTACG TCGAGCGCAG CGGCCAGCTC GAGCTGACCG ACGTGACGTT CTACGACGAC
GCGCACCTGA TGAAGGTGAT CGAGAAGATC GTGTCGCGGG TCGGGCGGCG CATCGACGAA
TCGACCCCGA TGGTCGATGC GCGCCTGCCG GACGGCTCGC GCGTGAACGC GATCATTCCG
CCGTCGGCGA TCGACGGGCC GCTGATGTCG ATCCGGCGCT TCGCGGTCAA CCCGCTGAAG
ATGGACGACC TCGTGGCCTA CCAGAGCCTC ACGCCGCCGA TGGCGGAACT GCTCGACGCG
CTGGCCCACG CGAAAGTGAA CGTGCTCGTG TCGGGCGGCA CCGGCAGCGG CAAGACGACG
CTGCTCAACA TCCTGTCGGG CTTCATTCCG CGCTCGGAGC GGATCGTGAC GATCGAGGAT
GCGGCCGAGC TGCAGCTGCA GCAACCGCAC GTGCTGCGGC TCGAAACGCG GCCGCCGAAC
ATCGAGGGAA AGGGCGAGAT CACGCAACGC ACGCTCGTGC GCAACGCGCT GCGGATGCGG
CCGGACCGGA TCATTCTCGG CGAAGTGCGC GGCGCGGAAG CGCTCGACAT GCTCAATGCG
ATGAACACCG GCCACGAAGG CTCGCTCGCG ACGATCCACG CGAACACGCC GCGCGATGCG
CTGACGCGGC TCGAGAACAT GATCAGCGTC GGCGGCCTGA CGCTGCCGCC GAAGACGATG
CGCCAGCAGA TCGCGTCGGC GATCTCGGTG GTGGTCCAGG CGACGCGGCT CACCGACGGC
AAGCGCAAGA TCGTCAGCAT CCAGGAGTTG ACCGGGATGG AAGGCGACAT CATCAACATG
CAGGAGATCT TCACGTTCAA GCGCACCGGC ATGGATCGCG ACGGTACGGT GCGCGGACAC
TTCTGCGCGA CCGGCGTGCG GCCGAAGTTC GCCGAGCGTC TGCAGGCGTT CGGCATCAAT
CTGCCGGATT CGCTGTACGA CCCGGCGCAG CGTTACGAGA CGAAGTGA
 
Protein sequence
MSLREQMSLY RTQPQAAGTE PAGAAHSSVR DAYQKLRREI HLTVLDRVEL ERLSRLPQEQ 
VRQEISSLIS RILDEERLLA NDIERRQLAI DVYDEMFGFG PLESLLRDPG ISDILVNTYR
QVYVERSGQL ELTDVTFYDD AHLMKVIEKI VSRVGRRIDE STPMVDARLP DGSRVNAIIP
PSAIDGPLMS IRRFAVNPLK MDDLVAYQSL TPPMAELLDA LAHAKVNVLV SGGTGSGKTT
LLNILSGFIP RSERIVTIED AAELQLQQPH VLRLETRPPN IEGKGEITQR TLVRNALRMR
PDRIILGEVR GAEALDMLNA MNTGHEGSLA TIHANTPRDA LTRLENMISV GGLTLPPKTM
RQQIASAISV VVQATRLTDG KRKIVSIQEL TGMEGDIINM QEIFTFKRTG MDRDGTVRGH
FCATGVRPKF AERLQAFGIN LPDSLYDPAQ RYETK