| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6260 |
|---|
| Symbol | |
|---|
| ID | 4315164 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 851253 |
|---|
| End bp | 852107 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638154104 |
|---|
| Product | ThiJ/PfpI domain-containing protein |
|---|
| Protein accession | YP_778138 |
|---|
| Protein GI | 115361001 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACCGACA GTAGCGGTAA CAATGCTTTC GTAAAGCCAC TCACCCGAGC AGGTCGCTCG
CGCCGCGATG TGCTCAAGCT TGGAAGCGCC GCCACGCTCG GCGCCGTCCT GGGCGGCGGC
GCGTTGCTCG CGCACGCCAC ACCGGTTGGC GCACAGGTAA ACAGCGAGGG GCTACTTCCC
CCGAATGCCC CGCTCAACAT TCTGATCGTC AATTACGACG GCGGTACGCT TCTCGACTTC
GCCGGCCCCA GCGAGATTTT CCACCGGCTA CCTAATACGA ACGTTCGCTA CGCAAGCCTC
GACGGAGGCA ACGTGACGCT CGAATTTGGC GTCGTGTATG GCAATACAGA ACGACTGGCC
GATATCGAGC AGACCGACGT GATCCTCGTC CCCGGCGGGT CCGACTTGTC GGCGCCCATG
CGGCCGGCGT ATCAGGCGCA GATCCGGCGT CTGGCGGAGA GCGCCAAGCA CGTTACGTCG
GTATGCAACG GATCGCTCGT GCTCGCCGCA ACCGGCGTGC TCAACGGCAA GCGAAGCGCC
TGCCATTGGG CCTTCGTCAA CAAGCTGTCC GAATATGGCG CGATTCCCGT TCCCGAGCGC
TTCGTCGAAG ACGACAACGG CCGGTTCATG AGCGGCGGCG GCGTGACGGC GGGCATCGAC
TTCGCGCTTC GCGTGGCGGC GAAGCTGCGC GGTCGACAGG CCGCGGAATT CACGCAGCTC
GCGATCGAAT ACGATCCCGC GCCGCCGTTC CACTCCGGTC ATCCGAGAGA CGCACGGCCG
GAAATCATCG CGATGGTCGA CAAGAAACTG CCCGGCGCAT CGAGGGGGCT CGCACGAATC
CCCGGCGTTC GCTGA
|
|---|
| Protein sequence | MTDSSGNNAF VKPLTRAGRS RRDVLKLGSA ATLGAVLGGG ALLAHATPVG AQVNSEGLLP
PNAPLNILIV NYDGGTLLDF AGPSEIFHRL PNTNVRYASL DGGNVTLEFG VVYGNTERLA
DIEQTDVILV PGGSDLSAPM RPAYQAQIRR LAESAKHVTS VCNGSLVLAA TGVLNGKRSA
CHWAFVNKLS EYGAIPVPER FVEDDNGRFM SGGGVTAGID FALRVAAKLR GRQAAEFTQL
AIEYDPAPPF HSGHPRDARP EIIAMVDKKL PGASRGLARI PGVR
|
|---|
| |