| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6173 |
|---|
| Symbol | |
|---|
| ID | 4315077 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | + |
|---|
| Start bp | 740976 |
|---|
| End bp | 742151 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638154017 |
|---|
| Product | polysaccharide export protein |
|---|
| Protein accession | YP_778051 |
|---|
| Protein GI | 115360914 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.371162 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAGGT TGCGTCAAAT GGAGTCGGCG CGTGCGTGCG CGCCGCGCCG AGCGTCGCGT
GTCGGTCCGC TCGTGATGAT CCTGCCGCTG TGCGCATTGC TGGGCGCGTG CGGCATCGCG
CCGGGCATGC GCATGCAGCA GCCGGCGTCG ATTCCGCTGC AAAGCGGCGC CACACCGGCC
GACAGTGCCG CGTTGCCGGT TCCGGTCACG AACATCGACC TCACGCTGAT CCGGCGCATG
CGCGATACCG AGCGCGGTTC GCGCGGCGAA GCCCGCGATG TCGTCGCGTC GCCGGACGCG
TACACCATCG GCCGCGGCGA TGTGCTGCAG ATCACCGTAT GGGACCACCC CGAGCTCGCG
GCGGCGCTCG GTGCGCCGGC GCAGGCCGCG CCACGCGCGG CGGATGCACC GCCGGGTTTC
GTCGTCGACC AGGACGGCAC GCTGCAGTTT CCCTATGCGG GCCGGCTGAC GGTCGCCGGA
CTGACGGCCG AGCAGGTGCA GACGCAGCTC ACGCGCCGTC TCGACAAGAC GTTCAGGAAT
CCGCAGGTCA CCGTGCGTAT CGCGTCGTTC CGCGCGAAGC AGGTGTATAT CGAGGGCGAG
GTGCATACGC CGGGCTCGCA AGCCGTGAAT GACATCCCGA TGACGCTGTA TGACGCGATC
GGGCGGGCCG GTGGCTTTTC GGCGGCGGCC GATCAAAGCC GCATCGTGCT GGTGCGCGAC
GGCGTCGAGC GCCGGATCGA CCTGACCGAG ATGGCCGAGC AGGGCCGCAA TCCGTCGAAG
ATGGTGCTGC GCAACGGCGA CCTCGTGCGG GTGCTGCCGC GCGACGAAAG CGGCGTGTTC
GTGATGGGCG AGGTCAACAA GCCCGTGACG GCGTTGCCGA TGCGCAATGG CCGGCTGACG
CTGAGCGAGG CGATCGCGCA GGCCGGCAGC CTGAACGCGA ACACGGCCGA TGCCGCGCAA
CTCTACGTGG TGCGCGGGAT GCAGGACGAG CAGCCACAGG TCTATCACCT CGATGCGCGC
TCGCCGGTCG CGATGGTGCT GGCGAATCAG TTCCAGCTGA AGCCGAAGGA CATCGTCTAT
GTCGACGGCA ACGGGCTCGT CCGCTTCAGC CGCGTGCTCA GCCTGTTGCT GCCGGCCATC
AACGCCGGCT TGACCGCGGC GATTGCGACC AAATGA
|
|---|
| Protein sequence | MQRLRQMESA RACAPRRASR VGPLVMILPL CALLGACGIA PGMRMQQPAS IPLQSGATPA
DSAALPVPVT NIDLTLIRRM RDTERGSRGE ARDVVASPDA YTIGRGDVLQ ITVWDHPELA
AALGAPAQAA PRAADAPPGF VVDQDGTLQF PYAGRLTVAG LTAEQVQTQL TRRLDKTFRN
PQVTVRIASF RAKQVYIEGE VHTPGSQAVN DIPMTLYDAI GRAGGFSAAA DQSRIVLVRD
GVERRIDLTE MAEQGRNPSK MVLRNGDLVR VLPRDESGVF VMGEVNKPVT ALPMRNGRLT
LSEAIAQAGS LNANTADAAQ LYVVRGMQDE QPQVYHLDAR SPVAMVLANQ FQLKPKDIVY
VDGNGLVRFS RVLSLLLPAI NAGLTAAIAT K
|
|---|
| |