| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6164 |
|---|
| Symbol | |
|---|
| ID | 4315068 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | + |
|---|
| Start bp | 731241 |
|---|
| End bp | 733241 |
|---|
| Gene Length | 2001 bp |
|---|
| Protein Length | 666 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638154008 |
|---|
| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
|---|
| Protein accession | YP_778042 |
|---|
| Protein GI | 115360905 |
|---|
| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGATG ACGTTCATCC GACGGCCAAC GCACGGGCCA CGCATGCGCC CGGCTGGCCG
ACGCCGACGA TCCAGAAGTC CCATGAGCGG TCCGAGACGT TCGGCCTGCA GGCGTCGGCA
CGTCCCGACT ACGACCTGCT GTCCGGCGCC GCGCTGTCGC TCAAGCGCGA GCAGAACCGC
GTGCTGTGCG TGCATGCGAT GCCCGTGATG GAGACGCTGC ACGAGCAGAT CGTCAATACC
CAAAGCATGA TCGTGCTGAC CGATGCGGAA GGGTTGATCC TGCATTCGAT CGGCGACGAC
GATTTCCTGC GGCGCGCGGA ACGCGTCGCG CTGCGCCCCG GCGCGAACTG GGCGGAGAAC
CGGCAAGGCA CCAACGCGAT CGGCACCGCG CTCGCGGAGC TGTGTCCGAT GGTCGTGCAC
GGCGACCAGC ACTTCCTCGC CGCGAATCAT TTCCTGACCT GTTCGAGCGT GCCGATCCTC
GATCCGTACG GCGACGCGAT CGGCGTGCTC GACGTGACGG GCGACCACCG CAGCTATCAC
CAGCACACGA TGGCGCTCGC GAAGATGTCG GTGCAGATGA TCGAGAACCA CCTGTTCACG
ACGACCTTCC AGGAGACGCT GCAGGTGTCG TTTCACGGCC GCCCCGAATT CCTCGGCACC
TTGATGGAAG GGATCGTCGC GTTTACCGCG GACGGCCGTT TCCTGTCGGC CAACCGCAGT
GCGCAGTTCC AGCTCGGGAT GCCGCTCGCC GCGCTGCGCG CGCATACGCT CGCGTCGCTG
TTCGACGTGA CGAGCGCGCA ACTGATCGAC CGGATGCGCG CAAGCACCGA GCCGCACGTG
TCGCTGAATC TCGGCAACGG CGCGGTGGTC TGCGCGCGCG TGCAGTTCCG CCGCGCGATG
CGGGCCGAGG GCAGCCGGCC CGCCGAAGTG CACGACGGCG CCGCGCCGGC CGCGCGGCCG
CCCGCTGCAC AAGGCGCGGC GAACCTGTCG CGGCTCAGCT ATCTCGACAC CGGCGATCCG
CAGGTGGCGG CGGTGATCGC GAAGGTCCGC AAGGTGATCG GCAAGGACAT TCCCGTGCTG
ATCACCGGCG AGACCGGCAC CGGCAAGGAG CTGCTCGCAC AGGCGATCCA CAACGACTCG
CCGCGCCGCG ATGGGCCGTT CGTCGCCGTC AACTGCGCAT CGATTCCGGA GACGCTGATC
GAATCCGAGC TGTTCGGCTA CGAGGAAGGG GCGTTCACCG GCGCACGCCG CAAAGGCGCG
ACCGGCAAGC TGCTGCAGGC GAACGGCGGC ACGCTGTTTC TCGACGAAAT CGGCGACATG
CCGTACCCGC TGCAGGTGCG GCTGCTGCGC GTGCTGCAGG AGCGCATCGT CAACCCGCTC
GGCTCGACGA AGGCGATCGG CGTCGACATC GCGATCATCT GCGCGACGCA CCGCGACCTG
CGCGACATGA TCGCGCAGAA CCGCTTTCGC GAGGACCTGT ATTACCGGCT CAACGGCCTC
GTCGTGCGTC TGCCGCCGCT GCGCGACCGC ACGGATCTCG CGGTGGTCGT CCAGAAGATG
CTGCAACGGG AAACGCTGTC GGGGCCCGGG CGCCGGCCGT TGAGCGTCGC GCCCGACGTG
ATGGCGCTGT TCGAGCGCTG CGCGTGGCCG GGCAATTTCC GGCAGCTCGC GAATCTGTTG
CGTACGGCGG CCGCGATGGT CGACGATGAC GGCGAGATCC GCTGCGAGCA TTTGCCGGAC
GACTTCTTCG ACGACGTGCG GCGCGACGAC GGGCCGGCGG CACAAGGTGC CTGCGCGCCG
CCGCCGCCGC TCGCCGCGCC CGCGTTCGCG GCCTGCGATG CGCGGTTGCA GGACGTAGCC
GCGTCGGCGA TTGCGGCCGC GCTCGCGCGC CATGGCGGCA ACGTGTCGGC CGCCGCACGC
GCGCTTGGCG TGTCGCGCAA CACGATCTAC CGCAAGATGC CGGCCGCCGG GCCCGATGCA
CTGGAGCCCG ACGAGCGCTG A
|
|---|
| Protein sequence | MRDDVHPTAN ARATHAPGWP TPTIQKSHER SETFGLQASA RPDYDLLSGA ALSLKREQNR
VLCVHAMPVM ETLHEQIVNT QSMIVLTDAE GLILHSIGDD DFLRRAERVA LRPGANWAEN
RQGTNAIGTA LAELCPMVVH GDQHFLAANH FLTCSSVPIL DPYGDAIGVL DVTGDHRSYH
QHTMALAKMS VQMIENHLFT TTFQETLQVS FHGRPEFLGT LMEGIVAFTA DGRFLSANRS
AQFQLGMPLA ALRAHTLASL FDVTSAQLID RMRASTEPHV SLNLGNGAVV CARVQFRRAM
RAEGSRPAEV HDGAAPAARP PAAQGAANLS RLSYLDTGDP QVAAVIAKVR KVIGKDIPVL
ITGETGTGKE LLAQAIHNDS PRRDGPFVAV NCASIPETLI ESELFGYEEG AFTGARRKGA
TGKLLQANGG TLFLDEIGDM PYPLQVRLLR VLQERIVNPL GSTKAIGVDI AIICATHRDL
RDMIAQNRFR EDLYYRLNGL VVRLPPLRDR TDLAVVVQKM LQRETLSGPG RRPLSVAPDV
MALFERCAWP GNFRQLANLL RTAAAMVDDD GEIRCEHLPD DFFDDVRRDD GPAAQGACAP
PPPLAAPAFA ACDARLQDVA ASAIAAALAR HGGNVSAAAR ALGVSRNTIY RKMPAAGPDA
LEPDER
|
|---|
| |