| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6150 |
|---|
| Symbol | |
|---|
| ID | 4315054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 711088 |
|---|
| End bp | 712872 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638153994 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_778028 |
|---|
| Protein GI | 115360891 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.102681 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.566386 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGAAGT GCGCATCCAC CATTCATCGC CTGATCGAGT CGCTCGAGGA CGTCGACGGT
GCGACGCACC GCATGGCGTT CGTCGACGAT GCGGGCAACG AAGCCGGCAT CACGTACCGG
CGTTTCGCGG AAGCGGTGTT CCGCGAGGCC GGCGCACTGC GCGAACTCGG CGTGCACGAG
AACGACATGG TGATGCTCGC GCTGCCGGCG TCCGTCGAGC ATGCGGTCGC GATGATGGCC
TGCGTGATGA TCGGCGCATT GCCGTGCACC GTGCCGGTTC CCGCCCGACG CGCCACGGCC
GGGCGTCAGG TGGTCGACGT CGCGTGCGAG CGATATCGTC CGCGCGTCGT CGTCGCCGCG
GATGCACAGG CCGCCGCGTG GCACGACGCT GCGTTTCCGG CCGCGTCGAC GCGCGTGGTC
GATTTCGCGA CGCTGTCGAT GGCCGCGGAC AGCGGCGCAC GCGCGCTGAT CAGCGCGAAG
CATGGCCGCG ATCCGCATCA TATTCAGTTG ACGTCCGGCT CGACGTCGCA TCCGAAAGCG
GCCGTGCTCA GCCACGAGAA CGTGATCGCG AACGTGCTCG GAATCGGCGG GTCGGTGCGC
TTCGACATCG CGGCCGGCGA CGGCACCGCG TCGTGGCTGC CGCTCTATCA CGACATGGGG
CTGCTGACGC TGCTGTCGAA CCTGCACTAC CGCGCGCCGC TATTGATGAT GCAGCCGAAC
AGCTTCATCC GGAACCCGCT CGGCTGGCTC AAGCGCATCG CGTCGGCGCG CGCGACCACG
ACGTCGGTGC CGACCTTCGC GCTGCGCTAC TGCGTGCGCC GCTTCAACGC GGCCGCGATG
GACGGCGTCG ACCTGTCCGC GTGCCGCAAC ATCTTCATCG GCGGCGAACG CGTGGACGAA
GCCACGCTGC GCGATTTCGC CGCGACGTTC GCGCCTTATG GCCTCGCCGC ATCGGCGCTG
CAGCCGTGCT ACGGGATGGC CGAATCGACG CTCGCGGTAT CGATGCACCG CGCGTGGCAT
GAAGGCGCGG TCGACGGTGC GCCGTACGTG ATCGCCGACA CGATCGGCCG GCGCGCGCTG
ATCGAGCAAC GCGCGGCTCA ACCAGTTACG CATGACGACA ACCGCGACCC GCACGCGGAA
ACTGAAACCG TGCTCGCGAT GGGCACGCCG ATCGAAGGCA TGGCGTTCTG TATCCTCGAC
GACGGCGACC ATCCGCTCGC GGCACGCACG GTCGGCGAAG TCGCGATTCG CGGCACATCG
GTGATGCTCG GCTACCTGAA CCCGGACGAC GGCGCGATCG CCGCGCCGCT GACCGCCGAC
GGCTGGTTCC GCACCGGCGA CATCGGTTAC GTCGCCGACG GTCAGCTGCA TATTCTCGGG
CGCAAGAAGG AAGTCATCAT CATTCGCGGC AGCAACTACT TCCCGCACGA GATCGAGGAA
GCGCTGGCCG CGCATCGGGC ACTGCGCAAG AGCACCTGCA TCGCCTTCGG GCTGCCCGAT
CCGCAGACGG GCACCGAACG CCTGGTCGTC GCGATCGAGG CACGGCCGGC CGACGCCACG
CCGCAGACGC GCACCGAATG CCAGCAGCTG CTCGCATCGC GGATCGGCTT CGCCGCACAG
GATCTGTGCT TCGTCGAACC CGGCTCGCTG CCGCGCACGA CGAGCGGCAA GCTCCAGCGG
CTGAAGTGTC GCGATCTGTA TGCGACCGGC GCGCTGCCCG TGATCGCCGC GCCGGGCGAG
ACGGCGGCCG CCGGCGCCGA CGCCCGGCAA GGAGCGTACG CATGA
|
|---|
| Protein sequence | MTKCASTIHR LIESLEDVDG ATHRMAFVDD AGNEAGITYR RFAEAVFREA GALRELGVHE
NDMVMLALPA SVEHAVAMMA CVMIGALPCT VPVPARRATA GRQVVDVACE RYRPRVVVAA
DAQAAAWHDA AFPAASTRVV DFATLSMAAD SGARALISAK HGRDPHHIQL TSGSTSHPKA
AVLSHENVIA NVLGIGGSVR FDIAAGDGTA SWLPLYHDMG LLTLLSNLHY RAPLLMMQPN
SFIRNPLGWL KRIASARATT TSVPTFALRY CVRRFNAAAM DGVDLSACRN IFIGGERVDE
ATLRDFAATF APYGLAASAL QPCYGMAEST LAVSMHRAWH EGAVDGAPYV IADTIGRRAL
IEQRAAQPVT HDDNRDPHAE TETVLAMGTP IEGMAFCILD DGDHPLAART VGEVAIRGTS
VMLGYLNPDD GAIAAPLTAD GWFRTGDIGY VADGQLHILG RKKEVIIIRG SNYFPHEIEE
ALAAHRALRK STCIAFGLPD PQTGTERLVV AIEARPADAT PQTRTECQQL LASRIGFAAQ
DLCFVEPGSL PRTTSGKLQR LKCRDLYATG ALPVIAAPGE TAAAGADARQ GAYA
|
|---|
| |