Gene Bamb_5996 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5996 
Symbol 
ID4314900 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp544274 
End bp545215 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content67% 
IMG OID638153840 
ProductLysR family transcriptional regulator 
Protein accessionYP_777874 
Protein GI115360737 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.178343 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.48899 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACACGT TACAGATGAT GCGCATTTTC GTCCGGGTGG CGGAGGAGGG CAGCTTCACG 
AGCGCGGCCC AGCGCCTGGA CATCACCACC GCCTATGCGT CGCGTTCGGT CGCGCAACTC
GAAACGCATC TGCGCACGCG CCTGCTCAAC CGGAGCACGC GCCGCATCGC ATTGACCGAT
GCCGGGCAGC GCTATCTCGA CCGGTGTCAG CGCATTCTCG GCTATATCGA CGAAGCGGAA
GCCGAGGCGG CGGACGCGCA GGCGAAGCCG TCGGGGCGCC TGCATGTGCA TGCGACCACA
AGTTTCGGCC AGGCCTACGT GGTGCCGGCG GTCGTGCGAT ACCGGCAGCG CTATCCGTCG
GTCGCGGTCG AACTTACGCT GTCGCAACAC GTGCCCGACA TCATCGACGA AGGTTACGAC
GTGTCGCTGC AGCTGAGCTC GGCGGAGCTG CCCGACTCGG GCCTGGTGTC GCAGCGGCTC
GGCGATGTGC ACAGCGTGCT GTGCGCGTCG CCCGCTTACC TGAAGGAGCG CGGCACGCCG
CGCTCCGTGC GCGATCTGGA AGCGCATTCA TGCCTGCAGA TCGTCACGCC GATCTTTCCG
CGCGACCGCT GGCATCTCGA CGGCCCCGAC GGTCGCGAGA CATTCGAGTT GCCGCTGCCG
GACTTCCAGG TGAACATCGC CGACGCGCTC GGCGCCGCGC TGCGCGCGGG CCTCGGGATC
GGCTCGTTGC CGATGTCGAG CGCGGTGCCG GCCCTGGCCA GTGGCGCGCT GGTTCGCGTG
TTGCCCGAGT ACCGGCTGCA GAAGCTGACG GTCTATACGC TGTACGCGTC GCGCCAGTAC
CTCGACGCGA AGATCCGGAC CTTCGTCGAT TTCCTGCGGG AATGCGTGCC CGAATTGCTG
GCCGCCGATG AGGCCGCGCT GCGCGGTTCC TGCGTGTCCT GA
 
Protein sequence
MDTLQMMRIF VRVAEEGSFT SAAQRLDITT AYASRSVAQL ETHLRTRLLN RSTRRIALTD 
AGQRYLDRCQ RILGYIDEAE AEAADAQAKP SGRLHVHATT SFGQAYVVPA VVRYRQRYPS
VAVELTLSQH VPDIIDEGYD VSLQLSSAEL PDSGLVSQRL GDVHSVLCAS PAYLKERGTP
RSVRDLEAHS CLQIVTPIFP RDRWHLDGPD GRETFELPLP DFQVNIADAL GAALRAGLGI
GSLPMSSAVP ALASGALVRV LPEYRLQKLT VYTLYASRQY LDAKIRTFVD FLRECVPELL
AADEAALRGS CVS