| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5960 |
|---|
| Symbol | |
|---|
| ID | 4314864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | + |
|---|
| Start bp | 493418 |
|---|
| End bp | 495295 |
|---|
| Gene Length | 1878 bp |
|---|
| Protein Length | 625 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 638153799 |
|---|
| Product | cytochrome c biogenesis protein, transmembrane region |
|---|
| Protein accession | YP_777838 |
|---|
| Protein GI | 115360701 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0785] Cytochrome c biogenesis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.690095 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCTCA TCGTCCTTGC CTATCTCGGC GGCGTCCTCA CGATCCTGAG CCCGTGCATC
CTGCCCGTGC TGCCGTTCGT GTTCGCGCGC GCCGACCAGC CGTTCGTCCG TACCGGCCTG
CCGCTGCTGA TCGGCATGGC GCTCACGTTC GCCGTCGTCG CGACGCTCGC CGCCGTCGGC
GGCGGCTGGG TCGCGCAGGC CAACCAGGCC GGCCGCTGGC TCGCGATCGT GCTGCTCGCG
GTGTTCGGCC TGACGCTGCT GCTGCCGCGC TTCGCCGAAC ACCTGACGCG CCCGCTCGTC
GCGGCCGGCA ACCGGCTCAC CGGCTTCGCG CAGCGCGACG GCCGCCCGGC GGGCCCCTTG
TCGTCGCTGC TGCTCGGCGT CGCGACCGGC CTGCTGTGGG CGCCGTGCGC GGGCCCGATC
CTCGGGCTCG TGCTGACCGG TGCCGCGCTG CGCGGGGCGA GCGTCGGCAC GACGGCGCTG
CTGGTCGCGT ATGCGGCCGG CGCGGCGACG TCGCTCGGCG TCGCGCTCGT GATCGGCGGC
AAGGTGTTCG CCGCGATGAA GCGCTCGCTC GGCGCCGGCG AATGGATCCG GCGCGGGATC
GGCGTGGCGC TGCTGGCTGG CGTCGGCGCG ATCGCGCTGG GCCTCGATAC GGGTGCGCTC
GCGCAGTTGT CGACGGTCAC GACGGGCAGC CTCGAGACGA AGCTCGTCGA CCGGCTCGGC
GGGCGCTCGA ATGGTGCGCC GGCCGCCATG TCCTCGACGA GCAACATCGG CAGCGGCGAC
AACGCCGGCA GCGGCACGGC GAGCGGCGCG ATGATGGCCG CGGCGACCGA TGGCGCACCG
GCGGCCGGCA GCGCGATGAT GCGCACGGCC GGCACGACGC CCGCGATGCA AGCGGCCGCG
CTGCCCGTCG AAGGCACGCT GCCGTCGCTC GACGGCGCCG TGCAGTGGCT GAATTCGCCG
CCGCTGACGG CGGCCGGCCT GCGCGGCAAG GTCGTGCTCG TCGATTTCTG GACGTATTCG
TGCATCAACT GCCTGCGCAC GCTGCCGTAC ACGACCGCGT GGGCGCACAA GTACGCGCCG
TACGGGCTCG TCGTGATCGG TGTGCACGCA CCGGAGTTCG CGTTCGAGCG CGACATCGGC
AACGTGAAGA AGGCCGTGCA TGACCTCGGC ATCGACTACC CGGTCGCGAT CGACAACGGC
TATGCGATCT GGCGCGCGTT CGGCAACGAA TACTGGCCCG CGCACTACTT CGTCGACGCG
CAGGGGCGGA TCCGCCATCA CCACTTCGGC GAAGGCGAAT ACGCGCAGTC GGAACGCGCG
ATCCAGTCGC TGCTCGCCGA AGCCGGCCAC CCGGAAGCGC TGAACGTGCC GCTCGGTCTC
ACCGGCGCGC CCGCGAAAGG CGCGCTCGCG GCGGCCGACA GCGCGGACGT CCGCTCGCCC
GAAACCTATG TCGGCTATGC GCGCGCGGAA GACTTCACGT CGCCGGGCGG CGTCGTGCGC
GACGCGTCAC ACCGCTACGA CGCGCCCGCT CACCCCGACC TGAACGACTG GGGCCTCGCC
GGCACGTGGC AGGTCGGCGC CGAGCGCGCG ACGCTCGCCG CGCCGGCCGG CCGGATCGTC
TACCGCTTCC ATGCGCGCGA CCTGCACCTC GTGCTCGGCC CGGGTGCGAA CGGCAAGCCC
GTGCGCTTTC GCGTGACGCT CGACGGCGCG GCGCCCGGCG CGGCCCACGG CGCGGACGTC
GACGCGCAGG GCTACGGCAC CGTCACCGGC CAACGCCTGT ATCAGTTGGT GCGGCAGCCG
GGCACGATCG CCGACCGCAC GTTCTCGATC GAGTTTCTCG ATCCGGGCGT CGATGCGTAT
GCGTTCACGT TTGGTTGA
|
|---|
| Protein sequence | MLLIVLAYLG GVLTILSPCI LPVLPFVFAR ADQPFVRTGL PLLIGMALTF AVVATLAAVG
GGWVAQANQA GRWLAIVLLA VFGLTLLLPR FAEHLTRPLV AAGNRLTGFA QRDGRPAGPL
SSLLLGVATG LLWAPCAGPI LGLVLTGAAL RGASVGTTAL LVAYAAGAAT SLGVALVIGG
KVFAAMKRSL GAGEWIRRGI GVALLAGVGA IALGLDTGAL AQLSTVTTGS LETKLVDRLG
GRSNGAPAAM SSTSNIGSGD NAGSGTASGA MMAAATDGAP AAGSAMMRTA GTTPAMQAAA
LPVEGTLPSL DGAVQWLNSP PLTAAGLRGK VVLVDFWTYS CINCLRTLPY TTAWAHKYAP
YGLVVIGVHA PEFAFERDIG NVKKAVHDLG IDYPVAIDNG YAIWRAFGNE YWPAHYFVDA
QGRIRHHHFG EGEYAQSERA IQSLLAEAGH PEALNVPLGL TGAPAKGALA AADSADVRSP
ETYVGYARAE DFTSPGGVVR DASHRYDAPA HPDLNDWGLA GTWQVGAERA TLAAPAGRIV
YRFHARDLHL VLGPGANGKP VRFRVTLDGA APGAAHGADV DAQGYGTVTG QRLYQLVRQP
GTIADRTFSI EFLDPGVDAY AFTFG
|
|---|
| |