Gene Bamb_5919 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5919 
Symbol 
ID4314824 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp402538 
End bp409929 
Gene Length7392 bp 
Protein Length2463 aa 
Translation table11 
GC content75% 
IMG OID638153759 
Productbeta-ketoacyl synthase 
Protein accessionYP_777798 
Protein GI115360661 
COG category[R] General function prediction only
[Q] Secondary metabolites biosynthesis, transport and catabolism
[I] Lipid transport and metabolism 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3321] Polyketide synthase modules and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00253672 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCAAGACA TTCAGCAGCT CCTCGCGAAG AGCCTGACCG AAATCAAGCG CCTGAAGGCG 
GCCAACCAGG CGCTCGAGCA GGCCCGCCGC GAGCCGATCG CGATTGTCGG CGCGGCCTGC
CGCTACCCGG GCGGGATCGG CTCGCTCGAC CAGCTCTGGA CCGCGCTCGA GGCGGGCCGC
GACGGCATCC GCACGATGGT CGGCGAGCGC TGGCCGATGC AGCGCTTCCT CACCGACGAT
CCCCACCGGC CCGGCGGCAT CTACAGCGAT GCGATGGGCC TGCTCGAGGC GATCGACGGT
TTCGATGCCG CGCATTTCGG CCTGCGCCAC GACGAGGCGA TCCACATCGA CCCGCAGCAT
CGGCTGCTGA TGGAAGTGGC CTGGGAGGCC TTCGAGGATG CCGGCTACGC GGTGGACGCG
TTCTCGGGCA GCCGCACCGG CGTCTACGTC GGGATCATGA ACGACGACTA CGGCCAGCTG
CAGGGGCCGC TGGAGGCGGC CAGCCTCTAC ATCGGCTCGG GCATCGCCAA GAGCTGCGCG
GCGGGGCGGC TGGCCTACAC CTTCGGGCTG GAGGGGCCGA CGCTGGCGCT CGACACCGCC
TGCTCCTCGT CGCTGGTGGG CGTGCACCTG GCCGTGCAGG CGCTGCGGCG CGGCGAATGC
GACGCGGCGC TGGCCGGTGG CGTGAACCTG ATCCTTTCGC CGCAGGGCAC GGTGGTGGCC
TGCCGCTCGC AGATGCTCTC GCCGAGCGGG CGCTGCCGCA CCTTCGACGC CAGCGCAGAC
GGCTACGTGC GCGCCGAGGG CTGCGGGCTG GTGCTGCTCA AGCGCTTGTC CGATGCCGAA
CGCGACGGCG ACCGGATCCT CGCGCTGGTC CGCGGCTCGG CCGTCAACCA CGACGGCCGC
ACGCAGGGCC TGACCGCGCC GAGCGGCCAG GCGCAGCGGC GCGTGATCGC GGCGGCGCTG
GCCGACGCGG GCGTGGCGGC CGCCGAGGTC GGCTTCGTCG AATGCCACGG CACCGGCACC
GCGCTGGGCG ATCCGATCGA GCTGCGCGCG CTGGAGGCCA GCTACGTGCT CGAAGCGGGC
GAGCGCGCGC CGCTGGTGGT CGGCGCGCTG AAGTCCAATC TCGGCCACAT GGAATCGGCG
GCCGGTATCG GTGGCCTGCA CAAGGCCATC CAGGTGGTGC GCCATCGCAG GGTGCCGAGG
AACCTGCATT TCGAGACCCT CAATCCGCAG ATTCGCGTCG ACCTCGAGCG GCTGCGCATC
GCCGCCGAGG CGGTGGCGAT GCCGGAACGG GAACGCGCGC TGGCGGGCGT CAGCTCGTTC
GGCTTCAGCG GCACCAATGC GCACGTGATC GTCGAGGCCT ATGCGCCGCG GGACGATCGA
GTGGGCGTGG ACGGCTCGGC ACATGAAGAC GCCGCCAACG CGGAGGCTGC ACCGCTGCAG
CTATTCCGGC TTGCCGCGCA TTCGGGCGCC GCGCTGGCCG ACTACGCGCG CCGCTACCTC
GACTGGCTCG ACGACGCGCA CGCGCGGCAA GCCCGGCTCG ATCCGGCCGC GCTCTGCTAC
ACGGCCGCGG TGGGCCGCGG CGAGGCCGGC TGCCGGATCG CGCTGAGCTT CGAGACGCTC
GATGACCTGC GCGCCTGCCT GCGCGAATAC CTCGACGTGG CCGGCGGCGA CCCGAGCGAG
CCGGTGCCGA AATCCTGCGC GGCCGAGTGG GTGATCGGCG GCGCGGCCGA TGTCGACTGG
CGCGTGGCCG GGGCGCTGCA TGCGCAGCCC GGCTTCTATC GCGAGCGGGT CCAGCAGGCC
TGGGCGCGCC TCGCGTCGCG CGTGCCGGAT GGCGCCGCCG CGTTCGCGCG GCTCTGCGCG
GGCGGCGATG CCGGCTTGCC GGCCGACGCG ACGCTACCGC ACACGGTGCA CCGCTGGGCG
CTCGCGCAGC TGCTAGTCCA CCTCGGCCTG CAGCCGGCCC GCGTGAGCGG CCATGGCGCC
GGCGAGTATG TGGCGGCGGC CGTCGCGGGC CTGGTCGACT GGGACACGGC GCTCGGCCTC
GCGGCCGGCG AGGCACTGCC GGCCGGCTTC AAGGCGGGCC GCGCGCGCTG CGAATTCACC
AGCCGCTTCG GCACGGGCGA GCTGCCCGAG TCGTGGCAGC GCGACGGCGG CCCGGCGGCG
GCCGACGCGG CTCCGCTCGG CGACGAGGCT TGGCCCGAGC ACGCGCAGGG CATCGTGGTC
GAGCTGGGCG CGGGCCTCGC GCTGCGGCTC GGCGATGCGG CCGACGAGCG CCTGTTCCGC
TGGACCCACG GCCGCACCAA TCGCGACCCG GCCCGGCCGC TCGAGGCCTT CCTCGCGCAG
GCCTACATGG CGGGCCTGCC GGTGCGCTGG GCGCCGCTGT TCGAGGCGCA GGCGCCGCGC
CGCCAGAGCC AGCCCGGTTA TCCGTTCCAG CGCGAGCGCG TGTGGACCGA CTGGGGGTAT
TCGTTCGACG CGACGCTGCC GTCCACCGTC GGCCGCGCCG GCGGCGGCGT GGCGCCGCGC
CTGCCGGCGC TCGCCACCGG GCTGGCCGCG GAGCCGCTCG ATCACCCGGT GCTGCGCAGC
CTGTTCGCGT GCCCGTCGGG CGCACGCAAT TTCTCGGGCG AGCTTTCGCT CACGGCGCTG
CCCTACCTGG CCGCGCACCG CATCCTCGGC GAGATCGTAC TGCCGGCCAG CGCGCAGTTC
GACCTGATCG CCACCGCGGG CCGCGCATGC TGGCCGGGCC AGCCGCTGCT GATCGACGAG
CTGCAGCTGC CGAACCGCTG CGTGCTCGGC GACGAGCCGC TCGAAGTCTA CTGCCACCTG
CGGCCCGCCG ACGGGCGCGT CGAGCTGCAT GGGCGGCCGC GCGGCGCGCC GGGCTGGACG
CTCCACGCGC GGGCGCGCAT CGCGCCGGAC GAGGCCCACG CGGCCAACGC GCCGGCCACC
GTCGATCCGG CCGCCTGGCG CGCCGCCTGC GCCGAACCGG TGCCGGTGCG CCGCCACTAT
CACGCGATCG CGCAGGTCGG GCTCGAATAC GAGGCCGACT TCCAGGGCAT CTTCGAACTG
TCGCGCGGCA CCGGCTGCGC GCTCGCCAAG ATCGCGCTGC CGCCCGGCGT CGACCAGTCG
CTGGACGGCT ACAGCACCCA CCCGATCCTG CTCGACGCCT GCCTGCAGGC GATTTCCGCA
GCCTCGCCGC CCGATGCCGG CGGCGAGCTG CTGATCCCGG CCGCGATGCG CGGCATCCAC
CTGTTCAGGC CGCTGCCCGA ACTGATCTGG TGCCGCGTCG AGGTCCTCGC CGACGACGGC
GGGCGCGGCA CCCAGCACGC CAAGCTGACG ATCGTCGACA TGCAGGGCGA GCCGGTGATG
CGCATCGACC GCTTCGAGAC CACGCGTTAC ACGGGCGCCG TCGCGCCCGC TGCCGAGAAC
TGGACCCACT GGCTCTACGA CCGGCACTGG GTGCCGGCCG CGCCGTGCGC GGCTTCGTCG
TCGTCGGCCG AGCGTGCCGC GCGCCACTGG CTGCTGCTCA GCGACGGCGG CACGGCCTGC
GCGGCGCTCG CGACGGTGCT GGCCGCGCGC GGCGATCGCG TCTCGGTGCT CGGCCGCGAG
GCCGCGCCGG CCGACGCGGA CGGCTTCGGC GCGTTGATCG ATGGCGCGGC GGCCGATGGC
GGCCTCGACG GCGTGATCCA CGGCTGGTCG CTCGACGGCT TCGATCCCGA GGCGCACGGG
CCGGGGCACG AGGCCGTGTC GGACGAGGCG CTGGCGCGCT GCGCGCAGGG GCCGCTGTGG
CTATGCCAGG CCGCGCTCGC GCCGGGCCGG CGCGAACTGG CGCTGCATTT CCTCACGCGC
GGCAGCCAGC CGGCCGGCGG CTCGCGCGTG CGGGCGCCGC TGGCCGCGCT GGCCTGGGGG
CTGGTGGGCA GCTTCGTCAA CGAACAGCGC CGCCCGGCGC GCCTGGTCGA TCTCGACCCC
GACAGCCGCG ACGGCCGCGC GGATGCCGCG CTGCTGGTGC AGGCGCTTCA CGCGGACGGC
GAGGAGACGC AGTACGCGGT GCGCGGGGCG CGCCTGCTGG TGGCGCGGCT GCGGCGCGCC
GCGCCGCTCG CGGCGCCAGC GCCGGTGATC GATCCCGAGG CCAGCTACCT GATCACCGGC
GGTTACGGCC AGCTCGGCAT CGAGACGGCC ACCGCGCTGG CGCGGCAGGG CGCGCGCCAC
CTGGTGCTGG TGGGCCGCGA TCCGTCCCGC GCCGAGGGCG ACCCGGCGCT GGCCGGCCTG
CGCGAGATGG GCGTGCGACT GACGCCGCTG GCGGCCGACG TGGGCGAGCG CGCCAGCTTC
CTGCCGCGCC TGGCCGAATG CCTGCGCACG CTGCCGCCGC TCAAGGGCGT GGTCCATTCG
GCGGGCAGCC TGGACGACGG CGTGCTCGAC GACCAGGACT GGGGGCGCTA CCTCGCGGTG
TTCGCCGCCA AGGTGGCCGG CACGCTCAAT CTCCATCACG CGCTGCGCAA GCATGCGCTC
GATTTCTTCG TGCTCTATTC GTCGGCGGCC GCGCTGCTCG GCAACCCGGG GCAGACCAAC
TACGCGGCCG CCAATGCCTT CCTCGACAGC TTCGCCGCCT ATCGCCGCGG CCTCGGGCTG
GCAGGGCTGG CGATCGGCTG GGCCGGCTGG GCGGGCGGGG GGATGGCCGC CGGCCGGGGC
GAGGCGCGCG CCGAGGCCAC GATCGGCCTG ATCCCGCCGG AGCAGGGTGC CGAGGTAATC
GCCCGCCAGT TCGCGCATCG CGACGGCGAT TTCGCCTTGA TCCCGATGCG GCTCGCCGCG
CTGGCCGGCC AGGACCGCAT GCCCTGGCTG CGTGCGCTGC TGGCCGAGCT GGTCGAGGCC
GAGGCAGGCG CGACGGGCGC GAGCGGAGCA CCGCGCGTCG AGCGCCGCGC CGGCGGCACG
GCCGGCGCGG CACTGCTGGC GGGCCTCGCG AGCCTCGATG CGGCGGCGCG CGCGGCGCGC
CTGAAGCGCC ATCTCGAGGC CGCGATCCGC AAGCTGCTCA ACCGCGCCGA TACGCTCGAC
GATCGCGCCA GCATGTTCGA TCTCGGTCTC GATTCGCTGC TCAGTATCGA CCTGCGCATG
CAGCTCGAGA AGGACCTGGC CTGCAGCCTC TCGACCACGG TGCTGCACGA CCATCCGACC
ATCGAGGCGC TGGCGGGCTT CCTGGCCGAA CGCGTGGGTG CGCCGCCGGC GGGGACGGTT
CGCGCAGGGG CCGCGGGCGG TGCCGGTGCA GGCACCGGCG CGCCTGCCGG CGCCACTGGG
GCCGCGGCTG CGCATGCCGT ATCGTCGGCC TCGCCCGTGC CGGCCGGGGC CGCGTCGGCC
GCTGCATCCG CTGCATCCGC TGCAGCGGCA GCCGGCGCCC CGTCGCGCGC CACGTTCGCG
GCCGAGCCGC GTCGTGCCGG CGGCGCGGCG CTGCCGCCCG GCGCCGGCCC CGACGACATC
GCCATCATCG GCGTATCGGG CCGCTACCCC GGCGCGGCCG ACCTCGGCGC GTTCTGGGAC
AACCTGCGCG ACGGCCACGA CGCGATCACC CCGATCCCGC CCGAGCGCTG GAACCACGAC
GCCTACTTCG ACCGGCAGCG CAACGTGCCC GGCAAGAGCT ACAGCGCCTG GGGCGGCTTC
ATCGAGGACG TCGACGCCTT CGACCCGGCC TTCTTCAGCA TCTCGCCGCG GATGTCGGCC
TACCTCGATC CGAAGGAGCG GCTGTTCCTC GAGACGGTCT GGAACCTGCT GGAGGAGGCG
GGCGAGACGC GCGAGCGCAT GCAGCAGGCC TATGGCGCGC AGGTGGGCGT GTTCGTCGGC
GCGATGTACC AGCTCTATGG CGCCTGCGCG GCCGACGAGG GCGAGCGCGT GGCCACCGCG
CTGTCCTCCT ACAACGCGAT CGCGCATCGC ACCTCGTACT TCTTCAACCT GCGCGGGCCG
AGCATCGCGC TCGACACAAT GTGCTCGTCG TCGCTGACGG CGGTCCACTA CGCCTGCCGC
AGCCTGCTCG ACGGCGACTG CGCGCTGGCC ATCGCGGGCG GCGTGAACCT GTCGCTGCAT
CCGCGCAAGT ACGTCGGGCT GAGCCAGGCG CAGATCGTCG GCAGCCATGC CGACAGCCGC
AGCTTCAGCG ACGGCGACGG CTACCTGCCG GCCGAGGGCG TGGGCGCCGT GCTGCTCAAG
CCGCTGGCCC GCGCGCTGGC CGACGACGAC CGGATCCTGG CGGTGATCAA AGCCTCCTCG
GTCAACCACG GCGGCCGCGC GACCGGCTAC TACGCGCCGA ACGCGAACGC CCAGGTCGAC
CTGATGGAGG CCAGCTTCCG CAAGGCCGGC GTGTCGCCCG AGTCGATCGA CTACATCGAG
GCCGCCGCCA ACGGCACCAG CCTCGGCGAC GCGGTCGAGC TGCGCGCGCT GGCGCGCGTG
TTCGACGGCA CCGCGCGCGA CGGCCGGCGC GTGCCGATCG GCACTGTGAA GTCGAACATC
GGCCATCCCG AGGCGGCCTC GGGCATCGCG CAACTGACCA AGGTGATCCT GCAGATGCAG
CACGAGACGC TGGTGCCCTC GATCAAGACC GAGCCCGTCA ACCCCAACCT CGACCTGGCC
CACACGCCGT TCCGCCTGCT CTCGCGGCAG GCGGCCTGGC CGTCCGATCC GGCGCGGCCG
CGGCGCGCCA CGGTCAGCTC GTTCGGCGCG AGCGGCGCGA ACGCGCACCT GATCGTCGAG
GCCTTCGAGA CGGTCGAGGC GGAGCCCGCG CCAGCCGTCG CGCAAGCGGC GCCGCCGGCC
GAGATCGTGG TGCTGTCGGC GCGCACGCCG GCTCAGTTGC GCGAGGTGGC GCGGCGCCTG
CTGGCCTGGC TCGCCACGCG GCAGGCGGCG GGCAGGGCGG AATCGGCGGT GCCGCTGGCC
GAGCGCGGCC GCGCCTGCTC GCTCGCGAAT CTCGCGCACA CGCTGCAGAT CGGGCGCGAG
GCGATGGACT GCCGGCTCGC GCTGCTGGCC GACAGCCTCG ACACGCTTGG CGATGGCCTG
CGGCGTTTCC TCGGCGAATC GGCCGGCGCG GCCGAGCCCG CGATCTACCA CGGCAACGTG
CAGGACCAGC TCGAGATGCG CAACCTGCTG GCGGGCGCCG CCGGCGACGC GATGGCGCAG
ACCCTGGTGG CCGAACGCAA CCTGGAGGGG CTGATGCTGC ACTGGGTCCA GGGCGGCAAC
GTGCCCTGGG CCGCCCTGCG CGAGGGCCGG CCGGCGCGCC GCCTGGTGCT GCCGACCTAT
CCGTTCGAGC GCGAGCGCTA CTGGCTGTCC GGCGCGAGCG ACGCCGCGGG CCGCGGCGCG
GGCGAGCCGC AGGTCCCTGC CGAGCCGGCC GAGGCGGCCA GCGAACCCAG TGTCGTCGAT
GGGCGGGCCT GA
 
Protein sequence
MQDIQQLLAK SLTEIKRLKA ANQALEQARR EPIAIVGAAC RYPGGIGSLD QLWTALEAGR 
DGIRTMVGER WPMQRFLTDD PHRPGGIYSD AMGLLEAIDG FDAAHFGLRH DEAIHIDPQH
RLLMEVAWEA FEDAGYAVDA FSGSRTGVYV GIMNDDYGQL QGPLEAASLY IGSGIAKSCA
AGRLAYTFGL EGPTLALDTA CSSSLVGVHL AVQALRRGEC DAALAGGVNL ILSPQGTVVA
CRSQMLSPSG RCRTFDASAD GYVRAEGCGL VLLKRLSDAE RDGDRILALV RGSAVNHDGR
TQGLTAPSGQ AQRRVIAAAL ADAGVAAAEV GFVECHGTGT ALGDPIELRA LEASYVLEAG
ERAPLVVGAL KSNLGHMESA AGIGGLHKAI QVVRHRRVPR NLHFETLNPQ IRVDLERLRI
AAEAVAMPER ERALAGVSSF GFSGTNAHVI VEAYAPRDDR VGVDGSAHED AANAEAAPLQ
LFRLAAHSGA ALADYARRYL DWLDDAHARQ ARLDPAALCY TAAVGRGEAG CRIALSFETL
DDLRACLREY LDVAGGDPSE PVPKSCAAEW VIGGAADVDW RVAGALHAQP GFYRERVQQA
WARLASRVPD GAAAFARLCA GGDAGLPADA TLPHTVHRWA LAQLLVHLGL QPARVSGHGA
GEYVAAAVAG LVDWDTALGL AAGEALPAGF KAGRARCEFT SRFGTGELPE SWQRDGGPAA
ADAAPLGDEA WPEHAQGIVV ELGAGLALRL GDAADERLFR WTHGRTNRDP ARPLEAFLAQ
AYMAGLPVRW APLFEAQAPR RQSQPGYPFQ RERVWTDWGY SFDATLPSTV GRAGGGVAPR
LPALATGLAA EPLDHPVLRS LFACPSGARN FSGELSLTAL PYLAAHRILG EIVLPASAQF
DLIATAGRAC WPGQPLLIDE LQLPNRCVLG DEPLEVYCHL RPADGRVELH GRPRGAPGWT
LHARARIAPD EAHAANAPAT VDPAAWRAAC AEPVPVRRHY HAIAQVGLEY EADFQGIFEL
SRGTGCALAK IALPPGVDQS LDGYSTHPIL LDACLQAISA ASPPDAGGEL LIPAAMRGIH
LFRPLPELIW CRVEVLADDG GRGTQHAKLT IVDMQGEPVM RIDRFETTRY TGAVAPAAEN
WTHWLYDRHW VPAAPCAASS SSAERAARHW LLLSDGGTAC AALATVLAAR GDRVSVLGRE
AAPADADGFG ALIDGAAADG GLDGVIHGWS LDGFDPEAHG PGHEAVSDEA LARCAQGPLW
LCQAALAPGR RELALHFLTR GSQPAGGSRV RAPLAALAWG LVGSFVNEQR RPARLVDLDP
DSRDGRADAA LLVQALHADG EETQYAVRGA RLLVARLRRA APLAAPAPVI DPEASYLITG
GYGQLGIETA TALARQGARH LVLVGRDPSR AEGDPALAGL REMGVRLTPL AADVGERASF
LPRLAECLRT LPPLKGVVHS AGSLDDGVLD DQDWGRYLAV FAAKVAGTLN LHHALRKHAL
DFFVLYSSAA ALLGNPGQTN YAAANAFLDS FAAYRRGLGL AGLAIGWAGW AGGGMAAGRG
EARAEATIGL IPPEQGAEVI ARQFAHRDGD FALIPMRLAA LAGQDRMPWL RALLAELVEA
EAGATGASGA PRVERRAGGT AGAALLAGLA SLDAAARAAR LKRHLEAAIR KLLNRADTLD
DRASMFDLGL DSLLSIDLRM QLEKDLACSL STTVLHDHPT IEALAGFLAE RVGAPPAGTV
RAGAAGGAGA GTGAPAGATG AAAAHAVSSA SPVPAGAASA AASAASAAAA AGAPSRATFA
AEPRRAGGAA LPPGAGPDDI AIIGVSGRYP GAADLGAFWD NLRDGHDAIT PIPPERWNHD
AYFDRQRNVP GKSYSAWGGF IEDVDAFDPA FFSISPRMSA YLDPKERLFL ETVWNLLEEA
GETRERMQQA YGAQVGVFVG AMYQLYGACA ADEGERVATA LSSYNAIAHR TSYFFNLRGP
SIALDTMCSS SLTAVHYACR SLLDGDCALA IAGGVNLSLH PRKYVGLSQA QIVGSHADSR
SFSDGDGYLP AEGVGAVLLK PLARALADDD RILAVIKASS VNHGGRATGY YAPNANAQVD
LMEASFRKAG VSPESIDYIE AAANGTSLGD AVELRALARV FDGTARDGRR VPIGTVKSNI
GHPEAASGIA QLTKVILQMQ HETLVPSIKT EPVNPNLDLA HTPFRLLSRQ AAWPSDPARP
RRATVSSFGA SGANAHLIVE AFETVEAEPA PAVAQAAPPA EIVVLSARTP AQLREVARRL
LAWLATRQAA GRAESAVPLA ERGRACSLAN LAHTLQIGRE AMDCRLALLA DSLDTLGDGL
RRFLGESAGA AEPAIYHGNV QDQLEMRNLL AGAAGDAMAQ TLVAERNLEG LMLHWVQGGN
VPWAALREGR PARRLVLPTY PFERERYWLS GASDAAGRGA GEPQVPAEPA EAASEPSVVD
GRA